Browse Element(s) Details


Os.38764.1.S1_x_at

Description gb:AK120118.1
DB_XREF= gi:37989741
TID=Os.38764.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131B07.18 (B1131B07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025N10, full insert sequence.
FL= gb:AK120118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1582011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os01g535308/11hypothetical protein
LOC_Os05g199008/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g053308/11Protein kinase domain containing protein
LOC_Os12g115908/11retrotransposon protein, putative, unclassified
LOC_Os05g042808/11retrotransposon protein, putative, unclassified
LOC_Os03g419508/11hypothetical protein
LOC_Os02g018808/11Sec63 domain containing protein
LOC_Os08g111608/11retrotransposon protein, putative, unclassified
LOC_Os09g041808/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g120408/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g046608/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g100908/11retrotransposon protein, putative, unclassified
LOC_Os04g053408/11retrotransposon protein, putative, unclassified
LOC_Os03g238108/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g120108/11retrotransposon protein, putative, unclassified
LOC_Os04g048508/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g112107/11retrotransposon protein, putative, unclassified
LOC_Os12g116007/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g171507/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g095297/11hypothetical protein
LOC_Os11g279507/11retrotransposon protein, putative, unclassified
LOC_Os01g235707/11hypothetical protein
LOC_Os02g355707/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g144207/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g115007/11retrotransposon protein, putative, unclassified
LOC_Os02g254306/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g162106/11hypothetical protein
LOC_Os06g386066/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g241906/11Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g155206/11retrotransposon protein, putative, unclassified
LOC_Os04g074106/11retrotransposon protein, putative, unclassified
LOC_Os11g178306/11transposon protein, putative, Mutator sub-class
LOC_Os08g123306/11retrotransposon protein, putative, unclassified
LOC_Os03g466205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g146505/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g037205/11retrotransposon protein, putative, unclassified
LOC_Os06g198544/11retrotransposon protein, putative, unclassified
LOC_Os03g238704/11retrotransposon protein, putative, unclassified
LOC_Os04g139604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g159204/11hypothetical protein
LOC_Os03g232103/11transposon protein, putative, unclassified
LOC_Os12g235002/11retrotransposon protein, putative, unclassified
LOC_Os03g354402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g298802/11hypothetical protein
LOC_Os11g201201/11retrotransposon protein, putative, unclassified
LOC_Os05g179201/11retrotransposon protein, putative, unclassified
LOC_Os11g156801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g194501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g171701/11retrotransposon protein, putative, unclassified
LOC_Os03g376901/11retrotransposon protein, putative, unclassified
LOC_Os01g283301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g090601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g098141/11F-box domain containing protein, expressed
LOC_Os02g260141/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os07g230301/11expressed protein
LOC_Os02g053901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g294201/11hypothetical protein
LOC_Os08g215901/11Phosphatidylinositol 3-kinase, root isoform, putative, expressed
LOC_Os11g240301/11retrotransposon protein, putative, unclassified
LOC_Os07g193701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g542701/11transposon protein, putative, unclassified, expressed
LOC_Os03g599201/11transposon protein, putative, unclassified
LOC_Os10g135301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g151101/11hypothetical protein
LOC_Os03g231801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g106101/11retrotransposon protein, putative, unclassified
LOC_Os06g032501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g341101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g181301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g252101/11Zinc knuckle family protein
LOC_Os11g239601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15790OsAffx.14713.1.S1_at10/115+8890086..8890606hypothetical protein
LOC_Os05g15800OsAffx.14714.1.S1_at11/115+8898037..8899438hypothetical protein
LOC_Os05g15810NANA5+8901266..8905597retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15820Os.38764.1.S1_x_at11/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820OsAffx.31813.1.S1_x_at6/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.54151.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15820Os.46610.1.S1_x_at4/115+8914171..8917029retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15830OsAffx.3496.1.S1_x_at2/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15830OsAffx.28492.1.S1_at1/115+8915827..8917045retrotransposon protein, putative, unclassified
LOC_Os05g15840OsAffx.18229.1.S1_x_at1/115+8917883..8922376retrotransposon protein, putative, unclassified
LOC_Os05g15850OsAffx.26914.1.S1_at11/115+8927584..8928656Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15860NANA5+8931006..8933564retrotransposon protein, putative, unclassified
LOC_Os05g15870OsAffx.26915.1.S1_at10/115+8934595..8937329hypothetical protein
LOC_Os05g15880Os.53670.1.S1_at11/115+8938717..8939867Xylanase inhibitor protein 2 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016301molecular_functionkinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38764.1.S1_x_at--424--367327Chr12:2065197..2065221 (25 bp)
CTTTTGCAAATGAGCCTATATTATG
NONE
Os.38764.1.S1_x_at--727--1073325Chr12:2065200..2065224 (25 bp)
TTGCAAATGAGCCTATATTATGCCA
NONE
Os.38764.1.S1_x_at--832--513345Chr12:2065202..2065226 (25 bp)
GCAAATGAGCCTATATTATGCCATC
NONE
Os.38764.1.S1_x_at--1083--299342Chr12:2065205..2065229 (25 bp)
AATGAGCCTATATTATGCCATCCTT
NONE
Os.38764.1.S1_x_at--160--893342Chr12:2065207..2065231 (25 bp)
TGAGCCTATATTATGCCATCCTTTG
NONE
Os.38764.1.S1_x_at--397--587342Chr12:2065208..2065232 (25 bp)
GAGCCTATATTATGCCATCCTTTGG
NONE
Os.38764.1.S1_x_at--797--167344Chr12:2065209..2065233 (25 bp)
AGCCTATATTATGCCATCCTTTGGT
NONE
Os.38764.1.S1_x_at--845--1023378Chr12:2065228..2065252 (25 bp)
TTTGGTATCCTTGTGCACTTGCATA
NONE
Os.38764.1.S1_x_at--559--7852Chr05:8914888..8914912 (25 bp)
GGTATGGAGGGACATATAGCCTATT
LOC_Os05g15820
Os.38764.1.S1_x_at--551--7611Chr05:8914880..8914904 (25 bp)
GGGACATATAGCCTATTTGAGGTTA
LOC_Os05g15820
Os.38764.1.S1_x_at--1050--10171Chr05:8914874..8914898 (25 bp)
TATAGCCTATTTGAGGTTAGCCTTT
LOC_Os05g15820
Target Sequence 
CTTTTGCAAATGAGCCTATATTATGCCATCCTTTGGTATCCTTGTGCACTTGCATATTTGCTGTGTGGCTTGTTGAGTAT
GTCATATGCTCANNCTTNCAATAATCAATCAANCCTCAGTTGAAGANAAAGGATCCAGAAGGAGAAGACGTTTGGCTTAT
ACCCCAGTTGAGCTGCCTGTNGGAGTGGAGCNGAAGCCATCGCTAGANCGTTANTNCCGCTGCTGTTTTNNTNTNTNTNN
NNNNTNNNTNNNNNNNNNNTAAGNATGNANNNNTNNANTNANTNNNNNNNATTTGTATATTAAATTGTCAGTTTGTGTAN
CTCGGCTGATTCCTGGACGAGGATTTTATNNANAAATNAGTTNGGAAATTACTAGTNAATTTCCGGGCGNNNCNNCGNNG
NNNCNNNNNNNNNNNNNNNNNNNNANTTNNNNNNNNNNNNNNNNNNNNGGNNNNNCTNANNNANCTATATTGATGATATT
GTTGTCAAATCGGATGGTATGGAGGGACATATAGCCTATTTGAGGTTAGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38764.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis