Browse Element(s) Details


OsAffx.28492.1.S1_at

Description tigr:9635.m01753
TID=OsAffx.28492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1743010/11hypothetical protein
LOC_Os07g168701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g164001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g030301/11retrotransposon protein, putative, unclassified
LOC_Os11g262301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g098901/11retrotransposon protein, putative, unclassified
LOC_Os01g311601/11retrotransposon protein, putative, unclassified
LOC_Os04g036801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g158301/11retrotransposon protein, putative, unclassified
LOC_Os07g164501/11transposon protein, putative, unclassified
LOC_Os06g156501/11retrotransposon protein, putative, unclassified
LOC_Os10g064801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g521201/11
LOC_Os09g070001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g230301/11expressed protein
LOC_Os07g164201/11F-box domain containing protein
LOC_Os04g077601/11retrotransposon protein, putative, unclassified
LOC_Os01g479801/11retrotransposon protein, putative, unclassified
LOC_Os04g053101/11retrotransposon protein, putative, unclassified
LOC_Os07g057501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g083201/11retrotransposon protein, putative, unclassified
LOC_Os10g247101/11expressed protein
LOC_Os09g038701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g030101/11retrotransposon protein, putative, unclassified
LOC_Os01g267441/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g265901/11expressed protein
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed
LOC_Os07g17470OsAffx.28493.1.S1_at11/117+10310478..10310873hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28492.1.S1_at--1076--10291Chr07:10288603..10288627 (25 bp)
TTTCCGCCACTTCGCAGTGGTTGCC
LOC_Os07g17430
OsAffx.28492.1.S1_at--1120--3631Chr07:10288612..10288636 (25 bp)
CTTCGCAGTGGTTGCCCCGCAATGA
LOC_Os07g17430
OsAffx.28492.1.S1_at--399--487349Chr12:4230256..4230763 (25 bp)
GCTATACAAAAGGATCAACATGCTC
LOC_Os12g08320
OsAffx.28492.1.S1_at--251--2931Chr07:10289113..10289137 (25 bp)
AAGGAATAGTGTACGGGCTTCGGCT
LOC_Os07g17430
OsAffx.28492.1.S1_at--661--1911Chr07:10289125..10289149 (25 bp)
ACGGGCTTCGGCTTGGTGTTGCGAT
LOC_Os07g17430
OsAffx.28492.1.S1_at--330--4091Chr07:10289177..10289201 (25 bp)
CGACGACCGCAACAACGAGGAGGCT
LOC_Os07g17430
OsAffx.28492.1.S1_at--508--1791Chr07:10289182..10289206 (25 bp)
ACCGCAACAACGAGGAGGCTCGGCT
LOC_Os07g17430
OsAffx.28492.1.S1_at--488--5471Chr07:10289227..10289251 (25 bp)
GAACTCGGCCTTCAAGGCGACGACG
LOC_Os07g17430
OsAffx.28492.1.S1_at--471--9571Chr07:10289304..10289328 (25 bp)
TCTTGCGAACCAAACGGCGGCAGTG
LOC_Os07g17430
OsAffx.28492.1.S1_at--812--5011Chr07:10289323..10289347 (25 bp)
GCAGTGGCGACCAAATGCGACGATG
LOC_Os07g17430
OsAffx.28492.1.S1_at--388--4611Chr07:10289329..10289353 (25 bp)
GCGACCAAATGCGACGATGGACGAC
LOC_Os07g17430
Target Sequence 
TTTCCGCCACTTCGCAGTGGTTGCCCCGCAATGAACCATGCTATACAAAAGGATCAACATGCTCAAAGGAATAGTGTACG
GGCTTCGGCTTGGTGTTGCGATGCCGACGACGGCCTCGGGGTGAACCGGCGACGACCGCAACAACGAGGAGGCTCGGCTG
GAGATCAAACCGAGGCGGCGAACTCGGCCTTCAAGGCGACGACGGGCTTCCCGGGGTCTTCGGCTTCGGGGAGATGGCTG
CCGGGCTTCTTCTCCTTCTTGCGAACCAAACGGCGGCAGTGGCGACCAAATGCGACGATGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis