Browse Element(s) Details


OsAffx.5352.1.S1_at

Description tigr:9635.m01755
TID=OsAffx.5352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g174509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed
LOC_Os07g17470OsAffx.28493.1.S1_at11/117+10310478..10310873hypothetical protein
LOC_Os07g17480Os.46012.2.S1_x_at7/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.27088.1.A1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.46012.3.S1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5352.1.S1_at--721--6653Chr07:10297453..10297477 (25 bp)
GTTGAGGTCGACATGAACTCTGTCA
LOC_Os07g17450
OsAffx.5352.1.S1_at--279--6153Chr07:10297456..10297479 (24 bp)
GAGGTCGACATGAACTCTGTCAAGA
LOC_Os07g17450
OsAffx.5352.1.S1_at--775--9471NONE
TCTGTCAAGAGGACTGCGCTTCATT
NONE
OsAffx.5352.1.S1_at--136--7091Chr07:10298171..10298190 (20 bp)
GTCAAGAGGACTGCGCTTCATTCTA
LOC_Os07g17450
OsAffx.5352.1.S1_at--582--2791NONE
AAGAGGACTGCGCTTCATTCTATTA
NONE
OsAffx.5352.1.S1_at--388--6191Chr07:10298171..10298195 (25 bp)
GAGGACTGCGCTTCATTCTATTAAG
LOC_Os07g17450
OsAffx.5352.1.S1_at--257--5731Chr07:10298174..10298198 (25 bp)
GACTGCGCTTCATTCTATTAAGAAA
LOC_Os07g17450
OsAffx.5352.1.S1_at--499--1951Chr07:10298214..10298238 (25 bp)
ACTGTACAACAGAGAGATCCAAAGG
LOC_Os07g17450
OsAffx.5352.1.S1_at--568--6011Chr07:10298225..10298249 (25 bp)
GAGAGATCCAAAGGACCCCTCTAGA
LOC_Os07g17450
OsAffx.5352.1.S1_at--725--1271Chr07:10298228..10298252 (25 bp)
AGATCCAAAGGACCCCTCTAGAGCC
LOC_Os07g17450
OsAffx.5352.1.S1_at--862--3751Chr07:10298243..10298267 (25 bp)
CTCTAGAGCCACCAAAAAGAAAAAT
LOC_Os07g17450
Target Sequence 
GTTGAGGTCGACATGAACTCTGTCAAGAGGACTGCGCTTCATTCTATTAAGAAAAAGAAGTATGAAAAAACTGTACAACA
GAGAGATCCAAAGGACCCCTCTAGAGCCACCAAAAAGAAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis