Browse Element(s) Details


OsAffx.28493.1.S1_at

Description tigr:9635.m01757
TID=OsAffx.28493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1747011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed
LOC_Os07g17470OsAffx.28493.1.S1_at11/117+10310478..10310873hypothetical protein
LOC_Os07g17480Os.46012.2.S1_x_at7/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.27088.1.A1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.46012.3.S1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17490OsAffx.28494.2.S1_at10/117+10325162..10327479hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28493.1.S1_at--970--1951Chr07:10310818..10310842 (25 bp)
ACTCGGCGACGAAGACTGAATGGCG
LOC_Os07g17470
OsAffx.28493.1.S1_at--560--6391Chr07:10310790..10310814 (25 bp)
GATCGACGGCGACTTAATTGTGAAG
LOC_Os07g17470
OsAffx.28493.1.S1_at--805--3171Chr07:10310775..10310799 (25 bp)
AATTGTGAAGGCAGCGGCTAGACGC
LOC_Os07g17470
OsAffx.28493.1.S1_at--193--1851Chr07:10310754..10310778 (25 bp)
ACGCAGAGCCGATGCAACAGTGGTG
LOC_Os07g17470
OsAffx.28493.1.S1_at--409--6331Chr07:10310744..10310768 (25 bp)
GATGCAACAGTGGTGCTCGCTCCAA
LOC_Os07g17470
OsAffx.28493.1.S1_at--1047--7771Chr07:10310733..10310757 (25 bp)
GGTGCTCGCTCCAACGACGGCTGTG
LOC_Os07g17470
OsAffx.28493.1.S1_at--280--5711Chr07:10310696..10310720 (25 bp)
GACTCAGCCACGAAGACTGGATGCT
LOC_Os07g17470
OsAffx.28493.1.S1_at--455--5731Chr07:10310660..10310684 (25 bp)
GACGGCGACTTGCAGGGCGGTGGCA
LOC_Os07g17470
OsAffx.28493.1.S1_at--490--9131Chr07:10310602..10310626 (25 bp)
TGCGGGTATCGGCATTGGCGGCGAG
LOC_Os07g17470
OsAffx.28493.1.S1_at--729--4911Chr07:10310541..10310565 (25 bp)
GCTTCGTGCGGCTGGGATCGGTCAA
LOC_Os07g17470
OsAffx.28493.1.S1_at--57--4093Chr08:10357722..10357746 (25 bp)
CGAGCCGGCGTGATGGAGACCGTGA
NONE
Target Sequence 
ACTCGGCGACGAAGACTGAATGGCGGCGGATCGACGGCGACTTAATTGTGAAGGCAGCGGCTAGACGCAGAGCCGATGCA
ACAGTGGTGCTCGCTCCAACGACGGCTGTGCGCGGCGAAGGGGACTCAGCCACGAAGACTGGATGCTGGCGGCGGATCGA
CGGCGACTTGCAGGGCGGTGGCAGGGAAGAAAACCAGAAGATGATGGAGGCGTGGATGCGGGTATCGGCATTGGCGGCGA
GGAGCACAAAGGCAAGGTCGGCGTCGGCGACGGGAGGGCTTCGTGCGGCTGGGATCGGTCAAGGGCGAGCCGGCGTGATG
GAGACCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis