Browse Element(s) Details


OsAffx.28494.2.S1_at

Description tigr:9635.m01759
TID=OsAffx.28494.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1749010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed
LOC_Os07g17470OsAffx.28493.1.S1_at11/117+10310478..10310873hypothetical protein
LOC_Os07g17480Os.46012.2.S1_x_at7/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.27088.1.A1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.46012.3.S1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17490OsAffx.28494.2.S1_at10/117+10325162..10327479hypothetical protein
LOC_Os07g17500NANA7+10340439..10343735transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17510Os.47463.1.S1_x_at6/117+10345196..10350434transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17510Os.14491.2.S1_x_at5/117+10345196..10350434transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17520OsAffx.28494.1.S1_at11/117+10351363..10353603hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28494.2.S1_at--456--1711Chr07:10326683..10326707 (25 bp)
ACCACTTGGAAGATGTTATCGTCGA
LOC_Os07g17490
OsAffx.28494.2.S1_at--281--6891Chr07:10326597..10326621 (25 bp)
GTATCCGTTGTTGTGGCACCCAAAT
LOC_Os07g17490
OsAffx.28494.2.S1_at--1026--8031Chr07:10326571..10326595 (25 bp)
GGAGACATTGGACGTCCTTGACGAT
LOC_Os07g17490
OsAffx.28494.2.S1_at--371--5771Chr07:10326552..10326576 (25 bp)
GACGATGTTAAAGACGGCTATTCCG
LOC_Os07g17490
OsAffx.28494.2.S1_at--184--8311Chr07:10326537..10326561 (25 bp)
GGCTATTCCGTACTCGATTTTGGCA
LOC_Os07g17490
OsAffx.28494.2.S1_at--48--3331Chr07:10326525..10326549 (25 bp)
CTCGATTTTGGCACGGTAGTTTTCA
LOC_Os07g17490
OsAffx.28494.2.S1_at--204--6131Chr07:10325887..10325911 (25 bp)
GAGGTCGTTAACTTCACAACGCCGG
LOC_Os07g17490
OsAffx.28494.2.S1_at--931--1811Chr07:10325869..10325893 (25 bp)
ACGCCGGTGTCGAGTGTCAAGGTTT
LOC_Os07g17490
OsAffx.28494.2.S1_at--265--3211Chr07:10325852..10325876 (25 bp)
CAAGGTTTTATCTCTCGTCATGAAA
LOC_Os07g17490
OsAffx.28494.2.S1_at--271--3611NONE
CTTGGACAGGGTTCGAGCTAGGCAA
NONE
OsAffx.28494.2.S1_at--320--2031Chr07:10325232..10325256 (25 bp)
ACTTTGTGGAGGTGCTCGTTTCGAA
LOC_Os07g17490
Target Sequence 
ACCACTTGGAAGATGTTATCGTCGAATTTGCTCCATGTCTTGAAAAGTTGCTCCATATAGAACAATCGGTGGGATTGGGA
GTCCGCGTATCCGTTGTTGTGGCACCCAAATTGGAGACATTGGACGTCCTTGACGATGTTAAAGACGGCTATTCCGTACT
CGATTTTGGCACGGTAGTTTTCAAGGGATTCGAGGTCGTTAACTTCACAACGCCGGTGTCGAGTGTCAAGGTTTTATCTC
TCGTCATGAAAAATCTCAGCTTGGACAGGGTTCGAGCTAGGCAAGAGTACTTTGTGGAGGTGCTCGTTTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28494.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis