Browse Element(s) Details


Os.16548.1.S1_at

Description gb:AK067254.1
DB_XREF= gi:32977272
TID=Os.16548.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099E09, full insert sequence.
FL= gb:AK067254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1740011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed
LOC_Os07g17370OsAffx.28490.1.S1_at11/117+10256009..10256467hypothetical protein
LOC_Os07g17380OsAffx.24740.3.A1_at11/117+10258929..10259447hypothetical protein
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16548.1.S1_at--416--6251Chr07:10275470..10275494 (25 bp)
GATGGTTCTGCCTAATTGCAGTCAT
LOC_Os07g17400
Os.16548.1.S1_at--384--4551Chr07:10275826..10275850 (25 bp)
GCCCTTTCTGCCGAGGAAGCCTTAA
LOC_Os07g17400
Os.16548.1.S1_at--151--5431Chr07:10275841..10275865 (25 bp)
GAAGCCTTAAACGAATTCGCTCAAG
LOC_Os07g17400
Os.16548.1.S1_at--973--10611Chr07:10275856..10275880 (25 bp)
TTCGCTCAAGAGACCTGTGGGTGCT
LOC_Os07g17400
Os.16548.1.S1_at--675--7491Chr07:10275872..10275896 (25 bp)
GTGGGTGCTCACAAATTACAATGAT
LOC_Os07g17400
Os.16548.1.S1_at--1012--6251Chr07:10275894..10275918 (25 bp)
GATGTGGTTGATCCTGTAACTCTAG
LOC_Os07g17400
Os.16548.1.S1_at--404--7391Chr07:10275930..10275954 (25 bp)
GTGAGGCATTTCTACAGTTATATTG
LOC_Os07g17400
Os.16548.1.S1_at--301--6851Chr07:10275958..10275982 (25 bp)
GTTTGCCTCTTATACTTCCAGATAA
LOC_Os07g17400
Os.16548.1.S1_at--242--10011Chr07:10276095..10276119 (25 bp)
TAGAAGGATGGTCTTTCCACCTCTG
LOC_Os07g17400
Os.16548.1.S1_at--44--9231Chr07:10276110..10276134 (25 bp)
TCCACCTCTGACAAAACACCTTTTA
LOC_Os07g17400
Os.16548.1.S1_at--1005--1731Chr07:10276127..10276151 (25 bp)
ACCTTTTACTTTAGTGTAGCTGCAT
LOC_Os07g17400
Target Sequence 
GATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGGTATAGAAGATCAGAGTCTTGCCCTT
TCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGATCCTGTA
ACTCTAGAAAGAGAAAATGTGAGGCATTTCTACAGTTATATTGATAGTTTGCCTCTTATACTTCCAGATAATATTTTCTT
CTTCTACTATGATTACCTACTCTAATCTGGAAACACCACAAGTTGTGTGTGTGAAATTATGAAAGCGGAGAAAGCCATTT
GTAGATTTTTCTTTGTTAGAGCTTAGAAGGATGGTCTTTCCACCTCTGACAAAACACCTTTTACTTTAGTGTAGCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis