Browse Element(s) Details


OsAffx.28490.1.S1_at

Description tigr:9635.m01747
TID=OsAffx.28490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1737011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed
LOC_Os07g17370OsAffx.28490.1.S1_at11/117+10256009..10256467hypothetical protein
LOC_Os07g17380OsAffx.24740.3.A1_at11/117+10258929..10259447hypothetical protein
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28490.1.S1_at--541--1631Chr07:10256046..10256070 (25 bp)
AGCCTTCAGGGCAACAAACCAATGT
LOC_Os07g17370
OsAffx.28490.1.S1_at--817--3271Chr07:10256060..10256084 (25 bp)
CAAACCAATGTTTCTTCCTATACTT
LOC_Os07g17370
OsAffx.28490.1.S1_at--162--9891Chr07:10256080..10256104 (25 bp)
TACTTCCCCAACTGATCTGGTTTTA
LOC_Os07g17370
OsAffx.28490.1.S1_at--748--831Chr07:10256118..10256142 (25 bp)
ATGGATCTGATTGGGTGAACTCGTC
LOC_Os07g17370
OsAffx.28490.1.S1_at--1095--2531Chr07:10256135..10256159 (25 bp)
AACTCGTCACTTTCGGTCTTTCTTG
LOC_Os07g17370
OsAffx.28490.1.S1_at--322--511Chr07:10256166..10256190 (25 bp)
ATCGTCTTCAACTTGATCGTGCTCT
LOC_Os07g17370
OsAffx.28490.1.S1_at--1051--6391Chr07:10256180..10256200 (21 bp)
GATCGTGCTCTACAAACCCATATAT
LOC_Os07g17370
OsAffx.28490.1.S1_at--654--3011Chr07:10256342..10256366 (25 bp)
AATGCAACTCTATCAGCCATTGTGG
LOC_Os07g17370
OsAffx.28490.1.S1_at--264--7531Chr07:10256363..10256387 (25 bp)
GTGGACTCTATGATTACCACCGCAC
LOC_Os07g17370
OsAffx.28490.1.S1_at--1010--6511Chr07:10256374..10256398 (25 bp)
GATTACCACCGCACTAAAGGAAAAG
LOC_Os07g17370
OsAffx.28490.1.S1_at--1145--6031Chr07:10256405..10256429 (25 bp)
GAGATAGCTCGTTTACACATAATGT
LOC_Os07g17370
Target Sequence 
AGCCTTCAGGGCAACAAACCAATGTTTCTTCCTATACTTCCCCAACTGATCTGGTTTTAGGTAACCATGTGAATGGATCT
GATTGGGTGAACTCGTCACTTTCGGTCTTTCTTGAACAACATCGTCTTCAACTTGATCGTGCTCTACAAACCCATATATC
TTTGCACAATGCAACTCTATCAGCCATTGTGGACTCTATGATTACCACCGCACTAAAGGAAAAGGATGAAGAGATAGCTC
GTTTACACATAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis