Browse Element(s) Details


Os.11000.2.S1_x_at

Description gb:AK121258.1
DB_XREF= gi:37990881
TID=Os.11000.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103D01, full insert sequence.
FL= gb:AK121258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1736011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17310Os.53898.1.S1_at11/117+10221827..10224447senescence-associated protein, putative, expressed
LOC_Os07g17320OsAffx.16308.1.S1_at11/117+10228390..10229262hypothetical protein
LOC_Os07g17320Os.55138.1.S1_x_at3/117+10228390..10229262hypothetical protein
LOC_Os07g17330Os.11195.1.S1_at11/117+10230137..10230977senescence-associated protein, putative, expressed
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17360Os.11000.2.S1_x_at11/117+10246058..10250747transposon protein, putative, unclassified, expressed
LOC_Os07g17370OsAffx.28490.1.S1_at11/117+10256009..10256467hypothetical protein
LOC_Os07g17380OsAffx.24740.3.A1_at11/117+10258929..10259447hypothetical protein
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11000.2.S1_x_at--318--2831Chr07:10250086..10250110 (25 bp)
AAGTTATTCTCTGATCGTGACCCTG
LOC_Os07g17360
Os.11000.2.S1_x_at--174--6391Chr07:10250098..10250122 (25 bp)
GATCGTGACCCTGAACTTTACAAAG
LOC_Os07g17360
Os.11000.2.S1_x_at--633--10711Chr07:10250261..10250285 (25 bp)
TTGCTCGCACATCATCACTTGTGTA
LOC_Os07g17360
Os.11000.2.S1_x_at--935--7691Chr07:10250505..10250529 (25 bp)
GGGTCAGTTAGACTAGCTTTCATTT
LOC_Os07g17360
Os.11000.2.S1_x_at--579--3071Chr07:10250535..10250559 (25 bp)
AATCAGATGTCTTGGGACTCCTGGC
LOC_Os07g17360
Os.11000.2.S1_x_at--634--7631Chr07:10250548..10250572 (25 bp)
GGGACTCCTGGCTTATTTTGTTACT
LOC_Os07g17360
Os.11000.2.S1_x_at--777--6771Chr07:10250567..10250591 (25 bp)
GTTACTTGTAGTTTGCTATGGCGAA
LOC_Os07g17360
Os.11000.2.S1_x_at--598--111Chr07:10250613..10250637 (25 bp)
ATTCTGTGTCTTTCTTTGCTTGTTT
LOC_Os07g17360
Os.11000.2.S1_x_at--867--10071Chr07:10250649..10250673 (25 bp)
TAGGCCCTCAGGATTGTAAATGGAA
LOC_Os07g17360
Os.11000.2.S1_x_at--74--1491Chr07:10250673..10250697 (25 bp)
AGCAAATCTAGTACTCTCTGAGGGA
LOC_Os07g17360
Os.11000.2.S1_x_at--492--7691Chr07:10250716..10250740 (25 bp)
GGGTATAGTTTATCGCTTTGTGATT
LOC_Os07g17360
Target Sequence 
AAGTTATTCTCTGATCGTGACCCTGAACTTTACAAAGAATGTTTGAGGNAAGTATGAGGAAAACAAAGCTAAAGAAAAGG
NTCATAAATTGAAGCAAGAATCNGTATGGAAACGCCTAGAAGAGGTTGCATCAGCAAAAGCCACAAGTGGCGAGGCCGTC
CTCATCTCTCCATCCCTTGCTCGCACATCATCACTTGTGTAGGAACTTTGTTAAAGGTCTTGGAGAATCATGAGATACTG
TACAGGATTGAATGTATATACAAGGTCTATGAAGGTGTGCAAATGAAGGGGGGAAAAATTCTGAGAAGGCCAGTTGGGTC
AGTTAGACTAGCTTTCATTTTTGTAAATCAGATGTCTTGGGACTCCTGGCTTATTTTGTTACTTGTAGTTTGCTATGGCG
AATGGTTAATCTGCCAAAAAGGGATTCTGTGTCTTTCTTTGCTTGTTTAGTTAAATATATAGGCCCTCAGGATTGTAAAT
GGAAGCAAATCTAGTACTCTCTGAGGGAGTGTTTGTCATAAAATGGGGGTATAGTTTATCGCTTTGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11000.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis