Browse Element(s) Details


Os.55138.1.S1_x_at

Description gb:AK107560.1
DB_XREF= gi:32992769
TID=Os.55138.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B08, full insert sequence.
FL= gb:AK107560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4648011/11Beige/BEACH domain containing protein, expressed
LOC_Os06g064804/11Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os02g474303/11expressed protein
LOC_Os07g173203/11hypothetical protein
LOC_Os10g032703/11hypothetical protein
LOC_Os07g108502/11retrotransposon protein, putative, unclassified
LOC_Os09g342602/11hypothetical protein
LOC_Os09g207301/11hypothetical protein
LOC_Os02g421001/11hypothetical protein
LOC_Os03g130001/11GTP-binding protein, putative, expressed
LOC_Os11g183201/11hypothetical protein
LOC_Os05g114281/11expressed protein
LOC_Os07g050201/11expressed protein
LOC_Os01g598191/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g415401/11hypothetical protein
LOC_Os01g251891/11Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os05g187801/11Rpp14 family protein, expressed
LOC_Os04g050601/11Cytochrome P450 94A1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46490Os.56318.1.S1_at7/116+28228547..28232906expressed protein
LOC_Os06g46500Os.49496.1.S1_at11/116+28233462..28237337L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os06g46510OsAffx.31069.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46510Os.25754.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46520OsAffx.20387.1.S1_x_at2/116+28246043..28248619retrotransposon protein, putative, unclassified
LOC_Os06g46530NANA6+28248872..28251446retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006950biological_processresponse to stress
GO:0007165biological_processsignal transduction
GO:0008033biological_processtRNA processing
GO:0008615biological_processpyridoxine biosynthesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0016126biological_processsterol biosynthesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
GO:0004526molecular_functionribonuclease P activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008237molecular_functionmetallopeptidase activity
GO:0009918molecular_functionsterol delta7 reductase activity
GO:0019825molecular_functionoxygen binding
GO:0050613molecular_functiondelta14-sterol reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55138.1.S1_x_at--392--85918Chr08:22211091..22211115 (25 bp)
TGGTACTTACACAACTCTTTCTCTC
NONE
Os.55138.1.S1_x_at--262--22113Chr08:10320652..10320676 (25 bp)
ACAACTCTTTCTCTCTCCATTTCAA
NONE
Os.55138.1.S1_x_at--884--29719Chr10:6151351..6151375 (25 bp)
AATGGGAGGAGTGTCCAGCAGCTAA
NONE
Os.55138.1.S1_x_at--602--45736Chr11:24610371..24610394 (24 bp)
GCAGCTAATTACCACTTTTTTACAG
NONE
Os.55138.1.S1_x_at--121--2053Chr06:21885299..21885319 (21 bp)
ACTTTTTTACAGTGTTCACGAGCAA
NONE
Os.55138.1.S1_x_at--272--32911Chr11:10307308..10307330 (22 bp)
CAAATACACGTTTTTGGGTGTCTCA
LOC_Os11g18320
Os.55138.1.S1_x_at--1150--31726Chr10:15703662..15703686 (25 bp)
CAATCTTTCGGTGTCCTGTAGCAAA
NONE
Os.55138.1.S1_x_at--45--6911Chr06:28226069..28226093 (25 bp)
GTATCATATACTGCTATCGTTTTTT
LOC_Os06g46480
Os.55138.1.S1_x_at--66--6631Chr06:28226037..28226061 (25 bp)
GTTGGATTCTTGACTGCTATTCAGA
LOC_Os06g46480
Os.55138.1.S1_x_at--994--4871Chr06:28226022..28226046 (25 bp)
GCTATTCAGATTTGGAAATGTCAAC
LOC_Os06g46480
Os.55138.1.S1_x_at--150--7091Chr06:28226003..28226027 (25 bp)
GTCAACAATCTGCAATTTTTGTGCG
LOC_Os06g46480
Target Sequence 
TGGTACTTACACAACTCTTTCTCTCTCCATTTCAACCGAAAATAATAAAATAATGGGAGGAGTGTCCAGCAGCTAATTAC
CACTTTTTTACAGTGTTCACGAGCAAATACACGTTTTTGGGTGTCTCACAGCAAAGGCCACAATCTTTCGGTGTCCTGTA
GCAAATTTTGCCTAAATTAAATTTATGTATCATATACTGCTATCGTTTTTTTCCCCAAGTTGGATTCTTGACTGCTATTC
AGATTTGGAAATGTCAACAATCTGCAATTTTTGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55138.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis