Browse Element(s) Details


Os.49496.1.S1_at

Description gb:AK071465.1
DB_XREF= gi:32981488
TID=Os.49496.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098E17, full insert sequence.
FL= gb:AK071465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4650011/11L-ascorbate oxidase homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46490Os.56318.1.S1_at7/116+28228547..28232906expressed protein
LOC_Os06g46500Os.49496.1.S1_at11/116+28233462..28237337L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os06g46510OsAffx.31069.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46510Os.25754.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46520OsAffx.20387.1.S1_x_at2/116+28246043..28248619retrotransposon protein, putative, unclassified
LOC_Os06g46530NANA6+28248872..28251446retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g46540NANA6+28255525..28259849Anaphase promoting complex subunit 8/cdc23 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49496.1.S1_at--74--1151Chr06:28234172..28234196 (25 bp)
AGTCGCCAGAGCTACAACCTTAGAG
LOC_Os06g46500
Os.49496.1.S1_at--553--1391Chr06:28234149..28234173 (25 bp)
AGACGCAGTTGCTCGGTACACATTA
LOC_Os06g46500
Os.49496.1.S1_at--527--7751Chr06:28233945..28233969 (25 bp)
GGTGTATCCTCAATCATGGACTGCA
LOC_Os06g46500
Os.49496.1.S1_at--88--8131Chr06:28233928..28233952 (25 bp)
GGACTGCAATTTACATGCCTTTGGA
LOC_Os06g46500
Os.49496.1.S1_at--607--5891Chr06:28233873..28233897 (25 bp)
GAGCTGGGCTAGACAGTACCTCGGC
LOC_Os06g46500
Os.49496.1.S1_at--460--5551Chr06:28233803..28233827 (25 bp)
GACGAGAACCCGATCCCAAAGAACG
LOC_Os06g46500
Os.49496.1.S1_at--466--3491Chr06:28233744..28233768 (25 bp)
CAGGCCTCTCTGAACCTGAATTGGG
LOC_Os06g46500
Os.49496.1.S1_at--944--5871Chr06:28233631..28233655 (25 bp)
GAGCCCCAATTCTTTTGACAAGCTT
LOC_Os06g46500
Os.49496.1.S1_at--831--1451Chr06:28233597..28233621 (25 bp)
AGAAGATTGTACTCCTAGCATCCCA
LOC_Os06g46500
Os.49496.1.S1_at--27--551Chr06:28233578..28233602 (25 bp)
ATCCCATTTCTGCTATTCGCATTGT
LOC_Os06g46500
Os.49496.1.S1_at--588--7951Chr06:28233503..28233527 (25 bp)
GGATAATCTTGCTTCCTGACATTTA
LOC_Os06g46500
Target Sequence 
AGTCGCCAGAGCTACAACCTTAGAGACGCAGTTGCTCGGTACACATTACAGGTGTATCCTCAATCATGGACTGCAATTTA
CATGCCTTTGGATAATGTGGGGATGTGGAACATCAGGTCAGAGAGCTGGGCTAGACAGTACCTCGGCCAACAATTCTACC
TCCGGGTCTACTCTCCGGCGAACTCATGGCGGGACGAGAACCCGATCCCAAAGAACGCGCTCCTCTGCGGTCGGGCCTCG
GGGCGCCGGACCAGGCCTCTCTGAACCTGAATTGGGGATCAGTTTCATGTCACGAAGGGGTGACAGCTGATAAACTGATG
AGAATCAGATGAGAGCCAAGGATACATGTGGTGTTCAGATTATTGAGCCCCAATTCTTTTGACAAGCTTGAGAAGTTGAG
AAGATTGTACTCCTAGCATCCCATTTCTGCTATTCGCATTGTTAAGCAACTGTAGCTAAAATGTTGCAGCGAATTCTTTG
TATGGCAAGCAAGGATAATCTTGCTTCCTGACATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis