Browse Element(s) Details


Os.25754.2.S1_x_at

Description gb:NM_185559.1
DB_XREF= gi:34898203
GEN=P0034A04.13
TID=Os.25754.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A05.27 (P0489A05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0034A04.13 (P0034A04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4918011/11hypothetical protein
LOC_Os05g247204/11retrotransposon protein, putative, unclassified
LOC_Os09g289803/11hypothetical protein
LOC_Os07g431103/11retrotransposon protein, putative, unclassified
LOC_Os10g024403/11hypothetical protein
LOC_Os01g381403/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os04g147803/11hypothetical protein
LOC_Os01g292603/11retrotransposon protein, putative, unclassified
LOC_Os03g228402/11retrotransposon protein, putative, unclassified
LOC_Os12g259402/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g182802/11hypothetical protein
LOC_Os08g320202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g271902/11retrotransposon protein, putative, unclassified
LOC_Os08g154002/11retrotransposon protein, putative, unclassified
LOC_Os02g248002/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g351902/11retrotransposon protein, putative, unclassified
LOC_Os12g324301/11retrotransposon protein, putative, unclassified
LOC_Os07g300301/11hypothetical protein
LOC_Os06g465101/11hypothetical protein
LOC_Os07g494901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g240101/11hypothetical protein
LOC_Os07g378701/11hypothetical protein
LOC_Os06g402801/11retrotransposon protein, putative, unclassified
LOC_Os06g343101/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49130NANA7+29426729..29427076hypothetical protein
LOC_Os07g49140OsAffx.22588.1.S1_at11/117+29429669..29433278expressed protein
LOC_Os07g49150Os.144.1.S1_at10/117+29434116..2943843726S protease regulatory subunit 4 homolog, putative, expressed
LOC_Os07g49160NANA7+29439544..29442432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49170OsAffx.20387.1.S1_x_at1/117+29445777..29448534retrotransposon protein, putative, unclassified
LOC_Os07g49180Os.25754.2.S1_x_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180Os.25754.2.S1_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180OsAffx.31069.2.S1_x_at1/117+29449162..29452016hypothetical protein
LOC_Os07g49190NANA7+29453786..29454181retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49200OsAffx.5671.1.S1_at11/117+29456857..29457562hypothetical protein
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25754.2.S1_x_at--513--6057Chr11:10276971..10276995 (25 bp)
GAGTTGCCAGTGGTCGTTCCGTTAC
LOC_Os11g18280
Os.25754.2.S1_x_at--191--53510Chr11:10277036..10277060 (25 bp)
GAAGTTCGCCTGTGGAAACGAGCAT
LOC_Os11g18280
Os.25754.2.S1_x_at--721--45714Chr11:10277199..10277223 (25 bp)
GCGCTTGCTGACCAGGATCGTCGCA
NONE
Os.25754.2.S1_x_at--406--5191Chr07:29449272..29449296 (25 bp)
GAATCGGCGGCCGAAAACATCTTGT
LOC_Os07g49180
Os.25754.2.S1_x_at--82--491Chr07:29449270..29449294 (25 bp)
ATCGGCGGCCGAAAACATCTTGTGG
LOC_Os07g49180
Os.25754.2.S1_x_at--973--3931Chr07:29449268..29449292 (25 bp)
CGGCGGCCGAAAACATCTTGTGGCT
LOC_Os07g49180
Os.25754.2.S1_x_at--658--4691Chr07:29449266..29449290 (25 bp)
GCGGCCGAAAACATCTTGTGGCTGA
LOC_Os07g49180
Os.25754.2.S1_x_at--851--8391Chr07:29449264..29449288 (25 bp)
GGCCGAAAACATCTTGTGGCTGAAT
LOC_Os07g49180
Os.25754.2.S1_x_at--903--4091Chr07:29449261..29449285 (25 bp)
CGAAAACATCTTGTGGCTGAATGGG
LOC_Os07g49180
Os.25754.2.S1_x_at--453--40915Chr09:8332065..8332088 (24 bp)
CGAAGGCATCGGTCAACGTATCGAC
NONE
Os.25754.2.S1_x_at--357--9315Chr09:8332068..8332088 (21 bp)
AGGCATCGGTCAACGTATCGACGAG
NONE
Target Sequence 
GAGTTGCCAGTGGTCGTTCCGTTACTTGTGTCCGAACCACATGTGCCGGAAGGCGATGTAGATCGAAGTTCGCCTGTGGA
AACGAGCATGGCGACGACTCCGTTAGATCTCGAGAGTGCGCTTGCTGACCAGGATCGTCGCATCCAGTATTGGAGGACGA
AGTTTGAGGTCACGGAACTCGGGAGGACTATGCTGGAGGTGAGAAAGGACCAGGCCGTAGAGACACTCCGGGGTCGTGAG
GTGTGGTTCAACTCGTATCTGAAGAGTTGCTGCACATCCATGTCAAGAGTCTGTAGAGAGCTCCGAGTACCCCGTGGGGA
TCCCGAGGAATCGGCGGCCGAAAACATCTTGTGGCTGAATGGGGTCTGCGCCCAGCTCGAAGGCATCGGTCAACGTATCG
ACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25754.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis