Browse Element(s) Details


Os.7039.1.S1_at

Description gb:NM_185564.1
DB_XREF= gi:34898213
GEN=P0034A04.18
TID=Os.7039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034A04.18 (P0034A04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0034A04.18 (P0034A04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4921011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49160NANA7+29439544..29442432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49170OsAffx.20387.1.S1_x_at1/117+29445777..29448534retrotransposon protein, putative, unclassified
LOC_Os07g49180Os.25754.2.S1_x_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180Os.25754.2.S1_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180OsAffx.31069.2.S1_x_at1/117+29449162..29452016hypothetical protein
LOC_Os07g49190NANA7+29453786..29454181retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49200OsAffx.5671.1.S1_at11/117+29456857..29457562hypothetical protein
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7039.1.S1_at--450--791Chr07:29464606..29464630 (25 bp)
ATGTGTATGTTGATGTTGGCGCCCG
LOC_Os07g49210
Os.7039.1.S1_at--309--6911Chr07:29464645..29464669 (25 bp)
GTATCGGCAGCTGGTTCCGGAAGCA
LOC_Os07g49210
Os.7039.1.S1_at--1038--2071Chr07:29464689..29464713 (25 bp)
ACATTCCAGGTGTTTGCCATTGAGG
LOC_Os07g49210
Os.7039.1.S1_at--90--10691Chr07:29464725..29464749 (25 bp)
TTCCACTCTGAGTACGCCGCAAAGA
LOC_Os07g49210
Os.7039.1.S1_at--905--2731Chr07:29464746..29464770 (25 bp)
AAGAAGGCTGTCACGTTGCTTCCAT
LOC_Os07g49210
Os.7039.1.S1_at--1049--4931Chr07:29464920..29464944 (25 bp)
GCATTCGACTTTGCCGAGTGGCTCA
LOC_Os07g49210
Os.7039.1.S1_at--281--5211Chr07:29465001..29465025 (25 bp)
GAATTCGACTTGATCCCAAGGCTGT
LOC_Os07g49210
Os.7039.1.S1_at--251--9871Chr07:29465030..29465054 (25 bp)
TACAGGCGCAATCTGCTTGATCGAT
LOC_Os07g49210
Os.7039.1.S1_at--730--691Chr07:29465053..29465077 (25 bp)
ATGAGCTGTTCCTCGAGTGCCATTA
LOC_Os07g49210
Os.7039.1.S1_at--1053--2271Chr07:29465091..29465115 (25 bp)
AAATGCTGCCCTGGTGAGCGGTCGC
LOC_Os07g49210
Os.7039.1.S1_at--324--5891Chr07:29465106..29465130 (25 bp)
GAGCGGTCGCCCAAGTATCAGAACA
LOC_Os07g49210
Target Sequence 
ATGTGTATGTTGATGTTGGCGCCCGTAGCTATGGCTCCAGTATCGGCAGCTGGTTCCGGAAGCACTACCCCAAGCAGAAC
CATACATTCCAGGTGTTTGCCATTGAGGCCGACCCGGCCTTCCACTCTGAGTACGCCGCAAAGAAGGCTGTCACGTTGCT
TCCATATGCTGCTTGGGTCAAGAATGAGACCCTCAATTTTGAGATCAATGCTGATCCCGGGAAGGAGGATGAGGCCAAGG
CTAATGGCCGCGGCATGGGCCGCATCCGCCCCATGGCTGGCAAGAAGATGTCCGGTGAGGTGCGGAGTGTCCCGGCATTC
GACTTTGCCGAGTGGCTCAAGCGCACGGTGTCGGAGCAGGACTATGTGGTGATGAAGATGGATGTGGAGGGGACAGAATT
CGACTTGATCCCAAGGCTGTTTGATACAGGCGCAATCTGCTTGATCGATGAGCTGTTCCTCGAGTGCCATTACAACCGAT
GGCAGAAATGCTGCCCTGGTGAGCGGTCGCCCAAGTATCAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis