Browse Element(s) Details


Os.27462.1.S1_at

Description gb:AK069112.1
DB_XREF= gi:32979136
TID=Os.27462.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034A04.22 (P0034A04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008B11, full insert sequence.
FL= gb:AK069112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4924011/11ser-thr protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27462.1.S1_at--370--411Chr07:29485055..29485079 (25 bp)
ATCTGGTTACTTTGAAGGCAAGATG
LOC_Os07g49240
Os.27462.1.S1_at--968--10471Chr07:29485061..29485085 (25 bp)
TTACTTTGAAGGCAAGATGACTCTT
LOC_Os07g49240
Os.27462.1.S1_at--912--931Chr07:29485070..29485094 (25 bp)
AGGCAAGATGACTCTTGCAGAGCTG
LOC_Os07g49240
Os.27462.1.S1_at--201--1611Chr07:29485090..29485114 (25 bp)
AGCTGATTGACCCAAGCCTGGGATC
LOC_Os07g49240
Os.27462.1.S1_at--4--3251Chr07:29485102..29485126 (25 bp)
CAAGCCTGGGATCATTCCCTGAAGA
LOC_Os07g49240
Os.27462.1.S1_at--766--8631Chr07:29485108..29485132 (25 bp)
TGGGATCATTCCCTGAAGACGCTGC
LOC_Os07g49240
Os.27462.1.S1_at--549--1491Chr07:29485336..29485360 (25 bp)
AGCAACAGCAATTGATTCCCCAATG
LOC_Os07g49240
Os.27462.1.S1_at--297--2151Chr07:29485340..29485364 (25 bp)
ACAGCAATTGATTCCCCAATGTGAT
LOC_Os07g49240
Os.27462.1.S1_at--12--6591Chr07:29485349..29485373 (25 bp)
GATTCCCCAATGTGATATAGTAGCA
LOC_Os07g49240
Os.27462.1.S1_at--4--6771Chr07:29485399..29485423 (25 bp)
GTTAATCATCAAGACTACTCAAGAG
LOC_Os07g49240
Os.27462.1.S1_at--97--2031Chr07:29485412..29485436 (25 bp)
ACTACTCAAGAGTTTGGTGGTTGTG
LOC_Os07g49240
Target Sequence 
ATCTGGTTACTTTGAAGGCAAGATGACTCTTGCAGAGCTGATTGACCCAAGCCTGGGATCATTCCCTGAAGACGCTGCGC
GTGCATTGTGCGATGTGGCGAGGTGGTGCATTGAGCCAGAGCCGAGCAAGAGGCCGCTCATGTCACAGGTTGCAGGTCGG
ATGAAGGAGATCACCTCCCTGGGGCCTGAGGGAGCGACTCCAAAGGTGTCGCCGCTATGGTGGGCGGAGCTGGAGATCAT
GTCTGGCCAAGCTACCTAGCTATGCTGATGTCAACACCACCAGCAACAGCAATTGATTCCCCAATGTGATATAGTAGCAA
ATTCTTTCATTTCTTTTCTTGTTTGTTAATCATCAAGACTACTCAAGAGTTTGGTGGTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis