Browse Element(s) Details


Os.30497.1.S1_at

Description gb:AK108769.1
DB_XREF= gi:32993978
TID=Os.30497.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA repair protein rhp54 (RAD54 homolog) (P0034A04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H04, full insert sequence.
FL= gb:AK107344.1 gb:AK108769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4921011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49160NANA7+29439544..29442432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49170OsAffx.20387.1.S1_x_at1/117+29445777..29448534retrotransposon protein, putative, unclassified
LOC_Os07g49180Os.25754.2.S1_x_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180Os.25754.2.S1_at11/117+29449162..29452016hypothetical protein
LOC_Os07g49180OsAffx.31069.2.S1_x_at1/117+29449162..29452016hypothetical protein
LOC_Os07g49190NANA7+29453786..29454181retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49200OsAffx.5671.1.S1_at11/117+29456857..29457562hypothetical protein
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30497.1.S1_at--248--4011Chr07:29469853..29469877 (25 bp)
CGTGCTCTTTGCCTGTGAAGGAAGA
LOC_Os07g49210
Os.30497.1.S1_at--315--2851Chr07:29469920..29469944 (25 bp)
AAGTGCACCGGAGTTTCACATTCCA
LOC_Os07g49210
Os.30497.1.S1_at--1133--71Chr07:29469939..29469963 (25 bp)
ATTCCACGGACACCTGCACAGAATA
LOC_Os07g49210
Os.30497.1.S1_at--795--1351Chr07:29469965..29469989 (25 bp)
AGAGAAGCATAATCGTCCTCCTTTC
LOC_Os07g49210
Os.30497.1.S1_at--1103--9751Chr07:29469974..29469998 (25 bp)
TAATCGTCCTCCTTTCTCATGTAAG
LOC_Os07g49210
Os.30497.1.S1_at--260--2711Chr07:29470002..29470026 (25 bp)
AAGCTATTTACTTCATCAGGCACCC
LOC_Os07g49210
Os.30497.1.S1_at--14--2571Chr07:29470035..29470059 (25 bp)
AACTGTGAACCAGCATTCTGCCAAA
LOC_Os07g49210
Os.30497.1.S1_at--250--1311Chr07:29470150..29470174 (25 bp)
AGAGGGACTCTATGTTTAACTTCGA
LOC_Os07g49210
Os.30497.1.S1_at--935--3131Chr07:29470188..29470212 (25 bp)
AATTACGTTCAGCATTCTTATCGAG
LOC_Os07g49210
Os.30497.1.S1_at--1147--6151Chr07:29470215..29470239 (25 bp)
GAGGATTTTACATGGCCACCTTCTG
LOC_Os07g49210
Os.30497.1.S1_at--391--1971Chr07:29470301..29470325 (25 bp)
ACTGACGACATTAGCACTTCTTGAG
LOC_Os07g49210
Target Sequence 
CGTGCTCTTTGCCTGTGAAGGAAGAGCCAAGCTCAGTGGAAATAGAGGAGAAAAGCTCAAAAGAGCAAAGTGCACCGGAG
TTTCACATTCCACGGACACCTGCACAGAATAAAGAGAAGCATAATCGTCCTCCTTTCTCATGTAAGCCGAAGCTATTTAC
TTCATCAGGCACCCTTGGTGTTAACTGTGAACCAGCATTCTGCCAAAAGGTGGGCGGGAAAAGAAAGAGGCACATGTGCG
AGAGAGAATACAAACAAATGATTGACCAATGCATAGGAAACATTGAGAGTGAAATGGAGAGGGACTCTATGTTTAACTTC
GATGCCAATATGATGAATTACGTTCAGCATTCTTATCGAGAAGAGGATTTTACATGGCCACCTTCTGCTGATAACCAAGA
GGTGGAGGAGGATGAGCTTGAAGAACTGTGGAAAGAAATGGATTATTCACTGACGACATTAGCACTTCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis