Browse Element(s) Details


Os.33799.1.S1_at

Description gb:AK074007.1
DB_XREF= gi:32984030
TID=Os.33799.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin-activating enzyme (P0034A04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence.
FL= gb:AK074007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4923011/11Ubiquitin-activating enzyme E1 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49190NANA7+29453786..29454181retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49200OsAffx.5671.1.S1_at11/117+29456857..29457562hypothetical protein
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0016567biological_processprotein ubiquitination
GO:0016925biological_processprotein sumoylation
GO:0005634cellular_componentnucleus
GO:0004839molecular_functionubiquitin activating enzyme activity
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33799.1.S1_at--1124--4591Chr07:29481338..29481362 (25 bp)
GCGAGCACCCCATTGAAGACTACCG
LOC_Os07g49230
Os.33799.1.S1_at--247--3091Chr07:29481364..29481388 (25 bp)
AATACATTTGCGAACCTGGCACTGC
LOC_Os07g49230
Os.33799.1.S1_at--1019--2031Chr07:29481390..29481414 (25 bp)
ACTATTCTCAATGGCTGAACCTGTT
LOC_Os07g49230
Os.33799.1.S1_at--706--6251Chr07:29481464..29481488 (25 bp)
GATGGTCCATCAAGGGCAATCTGAC
LOC_Os07g49230
Os.33799.1.S1_at--9--5911Chr07:29481496..29481520 (25 bp)
GAGCTCCTGCAATGGTTCAGCGACA
LOC_Os07g49230
Os.33799.1.S1_at--564--10451Chr07:29481527..29481551 (25 bp)
TTACCGCTTACAGCATTTCCTGTGG
LOC_Os07g49230
Os.33799.1.S1_at--951--2831Chr07:29481629..29481653 (25 bp)
AAGTCGCCAAGGTGGATGTTCCTGA
LOC_Os07g49230
Os.33799.1.S1_at--1067--211Chr07:29481665..29481689 (25 bp)
ATTTGGATCTTGTGGCGGCCTGCGA
LOC_Os07g49230
Os.33799.1.S1_at--520--5551Chr07:29481701..29481725 (25 bp)
GAAACGACATCGATATTCCTCTTGT
LOC_Os07g49230
Os.33799.1.S1_at--997--3611Chr07:29481721..29481745 (25 bp)
CTTGTCTCAGTTTACTTCCGATAGC
LOC_Os07g49230
Os.33799.1.S1_at--675--6551Chr07:29481848..29481872 (25 bp)
GATTAGTTCACTTATAGACTCGCAA
LOC_Os07g49230
Target Sequence 
GCGAGCACCCCATTGAAGACTACCGCAATACATTTGCGAACCTGGCACTGCCACTATTCTCAATGGCTGAACCTGTTCCA
CCCAAGGTGATGAAGCATCAAGACATGAGCTGGACTGTATGGGACAGATGGTCCATCAAGGGCAATCTGACTGTTGCTGA
GCTCCTGCAATGGTTCAGCGACAAGGGCCTTACCGCTTACAGCATTTCCTGTGGCACTTCGCTGCTGTACAACAACATGT
TCGCAAGACACAAGGAGAGATTGAACAAGAAGGTGGTAGACGTGGCCAGAGAAGTCGCCAAGGTGGATGTTCCTGAATAC
AGGAAGCATTTGGATCTTGTGGCGGCCTGCGAGGATGATGATGGAAACGACATCGATATTCCTCTTGTCTCAGTTTACTT
CCGATAGCTNGTCAAACCTCCCCTAGCAGCTGAGNTGATCAGAGGAGANCAAAAAAGAAGAAAAGAAAACATCGCTACTC
TTAAGATTAGTTCGGTCATAGACTCATTAAGATTAGTTCACTTATAGACTCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis