Browse Element(s) Details


Os.4375.1.S1_a_at

Description gb:AB111050.1
DB_XREF= gi:31339303
GEN=PDC3
TID=Os.4375.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4375 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) PDC3 mRNA for pyruvate decarboxylase 3, complete cds.
PROD=pyruvate decarboxylase 3
FL= gb:AK100433.1 gb:AB111050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4925011/11Pyruvate decarboxylase isozyme 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0003984molecular_functionacetolactate synthase activity
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4375.1.S1_a_at--722--1651Chr07:29489710..29489734 (25 bp)
ACGCGCAGGCTGTCCAAAAACGGGT
LOC_Os07g49250
Os.4375.1.S1_a_at--757--3271Chr07:29489724..29489748 (25 bp)
CAAAAACGGGTGGTGGCTTGCATCG
LOC_Os07g49250
Os.4375.1.S1_a_at--216--9151Chr07:29489794..29489818 (25 bp)
TGCGTTGCGGGCAGCGGAGCATCAT
LOC_Os07g49250
Os.4375.1.S1_a_at--151--2751Chr07:29489886..29489910 (25 bp)
AAGAACTGGGACTACGTGGGCCTCG
LOC_Os07g49250
Os.4375.1.S1_a_at--187--7511Chr07:29489944..29489968 (25 bp)
GGGCCACCCGGGTGCGGTGCGAGGA
LOC_Os07g49250
Os.4375.1.S1_a_at--293--7631Chr07:29490001..29490025 (25 bp)
GGGACAAGGCGGACAGCCTCTGCTT
LOC_Os07g49250
Os.4375.1.S1_a_at--399--2951Chr07:29490006..29490030 (25 bp)
AAGGCGGACAGCCTCTGCTTCATCG
LOC_Os07g49250
Os.4375.1.S1_a_at--1102--10051Chr07:29490123..29490147 (25 bp)
TAGTACCGCCATTACCATTCATCCT
LOC_Os07g49250
Os.4375.1.S1_a_at--413--211Chr07:29490161..29490185 (25 bp)
ATTTGCACCTACCTGCTGCCTTTTA
LOC_Os07g49250
Os.4375.1.S1_a_at--180--3371Chr07:29490166..29490190 (25 bp)
CACCTACCTGCTGCCTTTTATATAT
LOC_Os07g49250
Os.4375.1.S1_a_at--586--6431Chr07:29490224..29490248 (25 bp)
GATCATATAGAATCATCGTACGAAT
LOC_Os07g49250
Target Sequence 
ACGCGCAGGCTGTCCAAAAACGGGTGGTGGCTTGCATCGGCGACGGCAGCTTCCAGGTGACGGCGCAGGACGTGTCGACG
ATGCTGCGTTGCGGGCAGCGGAGCATCATCTTCCTCATCAACAACGGCGGGTACACCATCGAGGTGGAGATCCACGACGG
GCCGTACAACGTGATCAAGAACTGGGACTACGTGGGCCTCGTCAACGCCATCCACAACGGCGAGGGGCGGTGCTGGGCCA
CCCGGGTGCGGTGCGAGGAGGAGCTGGAGGCGGCCATCGCGACGGCCACGGGGGACAAGGCGGACAGCCTCTGCTTCATC
GAGGTGGTGGCGCACAAGGACGACACCAGCAAGGAGCTCCTCGAATGGGGCTCCAGAGTCTCCGCCGCCAACTCCAGGCC
GCCCAACCCGCAGTAGTACCGCCATTACCATTCATCCTCGATCCCGGCCCCATTTGCACCTACCTGCTGCCTTTTATATA
TAAATTTCGATAATATTAGTATACTATATATATAGATCATATAGAATCATCGTACGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4375.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis