Browse Element(s) Details


Os.38120.1.S1_at

Description gb:AK119589.1
DB_XREF= gi:37989212
TID=Os.38120.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0034A04.28 (P0034A04.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D01, full insert sequence.
FL= gb:AK119589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4928011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38120.1.S1_at--3--9771Chr07:29510728..29510752 (25 bp)
TAATCTCATCTCATTTATTCTCCCT
LOC_Os07g49280
Os.38120.1.S1_at--1083--6111Chr07:29510612..29510636 (25 bp)
GAGTGTACATCAAACGGCCTCTTGT
LOC_Os07g49280
Os.38120.1.S1_at--224--10771Chr07:29510582..29510606 (25 bp)
TTGGTGTCTGCCATGCCGAAAGAAC
LOC_Os07g49280
Os.38120.1.S1_at--1160--5511Chr07:29510536..29510560 (25 bp)
GACACCCGTGTCCAAGTTTGTACTA
LOC_Os07g49280
Os.38120.1.S1_at--764--2591Chr07:29510512..29510536 (25 bp)
AACGACTAACGTGACCGTCATCACA
LOC_Os07g49280
Os.38120.1.S1_at--449--5351Chr07:29510472..29510496 (25 bp)
GAAGTTGTGATTGCTCAGCCATCAG
LOC_Os07g49280
Os.38120.1.S1_at--438--1691Chr07:29510456..29510480 (25 bp)
AGCCATCAGCTCTACATGCATAGTA
LOC_Os07g49280
Os.38120.1.S1_at--973--10131Chr07:29510433..29510457 (25 bp)
TATGCCTCAGGCTATCAGCTGTCAT
LOC_Os07g49280
Os.38120.1.S1_at--785--6231Chr07:29510405..29510429 (25 bp)
GATGGACCAGCATGTCGTCGTACAG
LOC_Os07g49280
Os.38120.1.S1_at--865--7851Chr07:29510362..29510386 (25 bp)
GGTAGTGTATCGAACGGCATCACAT
LOC_Os07g49280
Os.38120.1.S1_at--691--771Chr07:29510298..29510322 (25 bp)
ATGTGCAACCTCACTAGACCCTTGG
LOC_Os07g49280
Target Sequence 
TAATCTCATCTCATTTATTCTCCCTTGCTGCTATGCAATCTGTGAGTAGTTCTTTTTGTATAATCAGAAAAAAAAGGGAG
GGATTAGAATCGGAAACAAACAAAGACGAAACACAAGAGTGTACATCAAACGGCCTCTTGTCGCCTTTGGTGTCTGCCAT
GCCGAAAGAACGAACGTGCCAAAGAGGACAAGGACACCCGTGTCCAAGTTTGTACTAACGACTAACGTGACCGTCATCAC
ACTTCCTTCCCCTTGTGAAGTTGTGATTGCTCAGCCATCAGCTCTACATGCATAGTATGCCTCAGGCTATCAGCTGTCAT
TGAGATGGACCAGCATGTCGTCGTACAGTTCGACCAAAACAAAATAGGTAGTGTATCGAACGGCATCACATGTATAAATG
TACGCGTGTACTAGTAATAGCTTACAGCACATGTGCAACCTCACTAGACCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis