Browse Element(s) Details


Os.19304.1.S1_at

Description gb:AK065493.1
DB_XREF= gi:32975511
TID=Os.19304.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025M10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025M10, full insert sequence.
FL= gb:AK065493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4932011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19304.1.S1_at--412--3451Chr07:29543064..29543087 (24 bp)
CAGTCATATGGTGTGCTGCTGCAGT
LOC_Os07g49320
Os.19304.1.S1_at--869--1211Chr07:29543262..29543286 (25 bp)
AGTTACCAGCTCCTCAACTTGAAAA
LOC_Os07g49320
Os.19304.1.S1_at--624--2931Chr07:29543312..29543336 (25 bp)
AAGGCACCTTTGGTTGAGCACGCGA
LOC_Os07g49320
Os.19304.1.S1_at--347--4591Chr07:29543333..29543357 (25 bp)
GCGAACCAACCTAACGTACGATCAA
LOC_Os07g49320
Os.19304.1.S1_at--729--6971Chr07:29543348..29543369 (22 bp)
GTACGATCAACTCTTCCAAGGTCTA
LOC_Os07g49320
Os.19304.1.S1_at--714--4291Chr07:29543471..29543495 (25 bp)
CCTTGGTAGTTTTGGGTCTTGCTGA
LOC_Os07g49320
Os.19304.1.S1_at--1043--931Chr07:29543591..29543615 (25 bp)
AGGAATCTTCCGCTGTTAGCTAATC
LOC_Os07g49320
Os.19304.1.S1_at--376--10451Chr07:29543606..29543630 (25 bp)
TTAGCTAATCTTCTTCGGCAGCCGT
LOC_Os07g49320
Os.19304.1.S1_at--871--1671Chr07:29543625..29543759 (25 bp)
AGCCGTGAATGTGACGTCCCAATCA
LOC_Os07g49320
Os.19304.1.S1_at--865--8171Chr07:29543928..29543952 (25 bp)
GGAAGATTCTTAGCCGTCTTTTCAT
LOC_Os07g49320
Os.19304.1.S1_at--1023--9551Chr07:29543944..29543968 (25 bp)
TCTTTTCATCTTTGGCGGTCTATAT
LOC_Os07g49320
Target Sequence 
CAGTCATATGGTGTGCTGCTGCAGTTACCAGCTCCTCAACTTGAAAATGCCTTGAATAAGAATCCTGTACTGAAGGCACC
TTTGGTTGAGCACGCGAACCAACCTAACGTACGATCAACTCTTCCAAGGTCTACCTTGGTAGTTTTGGGTCTTGCTGAAG
ATCAACAGCAACCTGCACCTCAAGCACAAAGTAGCCAAAATCAGGCTGCAGAAACCAGCAGTTCAGCTGCAGATACTACG
ACAGAAGTGACCCAGGAATCTTCCGCTGTTAGCTAATCTTCTTCGGCAGCCGTGAATGTGACGTCCCAATCAACTATTGG
TTACTTCCCTTTCTGTATTAGTTATATGCCGGAAGGAGGTGGGCATTGAAGTTCAAGATGGGTCTGGAATAGACCCTTGT
TAGGACTTAGGACTTGGATAATTCATTATACNGTGGGTTTGGCNAAGACATATTGTAGCTGGGCAGTTGGATATGTAGTA
TACAGTTTTACCTTGACTAGGGAAATGGGAAGATTCTTAGCCGTCTTTTCATCTTTGGCGGTCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis