Browse Element(s) Details


Os.8107.1.S1_at

Description gb:AF332874.1
DB_XREF= gi:12698877
TID=Os.8107.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8107 (NCBI UniGene Cluster)
DEF=Oryza sativa phosphoinositide-specific phospholipase C mRNA, complete cds.
PROD=phosphoinositide-specific phospholipase C
FL= gb:AF332874.1 gb:AK070452.1 gb:AK061472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4933011/11phosphoinositide-specific phospholipase C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0007165biological_processsignal transduction
GO:0007242biological_processintracellular signaling cascade
GO:0004435molecular_functionphosphoinositide phospholipase C activity
GO:0004629molecular_functionphospholipase C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8107.1.S1_at--830--3111Chr07:29544802..29544826 (25 bp)
AATATTCTCCTCCAGACTTTTATGC
LOC_Os07g49330
Os.8107.1.S1_at--599--9251Chr07:29544796..29544819 (24 bp)
TCCTCCAGACTTTTATGCACGGGTG
LOC_Os07g49330
Os.8107.1.S1_at--342--6091Chr07:29544652..29544676 (25 bp)
GAGTACCAGCGGACTCGGTGATGAA
LOC_Os07g49330
Os.8107.1.S1_at--1053--6151Chr07:29544584..29544608 (25 bp)
GAGGATTTCACCTTCAAACTGACCG
LOC_Os07g49330
Os.8107.1.S1_at--375--10511Chr07:29544572..29544596 (25 bp)
TTCAAACTGACCGTGCCGGAGATCG
LOC_Os07g49330
Os.8107.1.S1_at--452--8511Chr07:29544442..29544466 (25 bp)
TGGCACTCCACGACCGCAAAGGGAT
LOC_Os07g49330
Os.8107.1.S1_at--446--2771Chr07:29544369..29544393 (25 bp)
CAACACACCGACACTTTCTTTCTTT
LOC_Os07g49330
Os.8107.1.S1_at--278--9631Chr07:29544282..29544306 (25 bp)
TCATGTTCCTGTGCATACGCATTTG
LOC_Os07g49330
Os.8107.1.S1_at--620--7331Chr07:29544272..29544296 (25 bp)
GTGCATACGCATTTGTGTCTGTACA
LOC_Os07g49330
Os.8107.1.S1_at--1126--8651Chr07:29544259..29544283 (25 bp)
TGTGTCTGTACATAGGCTCGGTCCT
LOC_Os07g49330
Os.8107.1.S1_at--29--2951Chr07:29544204..29544228 (25 bp)
AAGGCTTCACGCCATGTTCATTCCT
LOC_Os07g49330
Target Sequence 
AATATTCTCCTCCAGACTTTTATGCACGGGTGGGGATAGCGGGAGTACCAGCGGACTCGGTGATGAAGAGAACGAGGGCG
ATAGAGGATAACTGGGTGCCGGTGTGGGAGGAGGATTTCACCTTCAAACTGACCGTGCCGGAGATCGCGTTGCTGCGGGT
GGAGGTGCACGAGTACGACATGTCGGAGAAGGACGACTTCGGCGGCCAGACGGTGCTGCCGGTGTCGGANCTCATCCCGG
GGATCCGAGCGGTGGCACTCCACGACCGCAAAGGGATCAAGTTGAACAACGTCAAGCTTCTCATGCGCTTCGAGTTTGAA
TGACCCAACACACCGACACTTTCTTTCTTTCTCGCCGCATNGCATTGCACTGTGCCTGTGCNTGTGCAGCATCCATCATT
TGGTTTGGTTTTTCATGTTCCTGTGCATACGCATTTGTGTCTGTACATAGGCTCGGTCCTGTATATTGTTTGTGAGTAAC
ATGTAANAATAAGGCTTCACGCCATGTTCATTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis