Browse Element(s) Details


Os.11557.1.S1_at

Description gb:AK061013.1
DB_XREF= gi:32971031
TID=Os.11557.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B06, full insert sequence.
FL= gb:AK061013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4936011/11Peroxidase 21 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11557.1.S1_at--859--7091Chr07:29559802..29559826 (25 bp)
GTCAGAAAAGACTGCAGGTTCGTCA
LOC_Os07g49360
Os.11557.1.S1_at--598--1011Chr07:29559787..29559811 (25 bp)
AGGTTCGTCAACTCTAGCTAAGCTC
LOC_Os07g49360
Os.11557.1.S1_at--354--7091Chr07:29559781..29559805 (25 bp)
GTCAACTCTAGCTAAGCTCGACTAG
LOC_Os07g49360
Os.11557.1.S1_at--1036--4791Chr07:29559766..29559790 (25 bp)
GCTCGACTAGCTAGTAGTACACATA
LOC_Os07g49360
Os.11557.1.S1_at--97--9751Chr07:29559714..29559738 (25 bp)
TAATTGAGGTACGTTCTATGAGATC
LOC_Os07g49360
Os.11557.1.S1_at--849--9931Chr07:29559705..29559729 (25 bp)
TACGTTCTATGAGATCGATCGGTCT
LOC_Os07g49360
Os.11557.1.S1_at--6--6051Chr07:29559695..29559719 (25 bp)
GAGATCGATCGGTCTGTGAACTAAT
LOC_Os07g49360
Os.11557.1.S1_at--1087--8631Chr07:29559681..29559705 (25 bp)
TGTGAACTAATCGATCGGCGGCCTC
LOC_Os07g49360
Os.11557.1.S1_at--490--8351Chr07:29559665..29559689 (25 bp)
GGCGGCCTCTATCTGTTGGCATCGA
LOC_Os07g49360
Os.11557.1.S1_at--739--6611Chr07:29559651..29559675 (25 bp)
GTTGGCATCGACTCCTCCATTGGAT
LOC_Os07g49360
Os.11557.1.S1_at--999--5711Chr07:29559642..29559666 (25 bp)
GACTCCTCCATTGGATCTTTGTATT
LOC_Os07g49360
Target Sequence 
GTCAGAAAAGACTGCAGGTTCGTCAACTCTAGCTAAGCTCGACTAGCTAGTAGTACACATATACATACATATATGATCGA
TGTAAAAATAATTGAGGTACGTTCTATGAGATCGATCGGTCTGTGAACTAATCGATCGGCGGCCTCTATCTGTTGGCATC
GACTCCTCCATTGGATCTTTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis