Browse Element(s) Details


Os.12693.5.S1_x_at

Description gb:D25238.1
DB_XREF= gi:433216
TID=Os.12693.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12693 (NCBI UniGene Cluster)
UG_TITLE=SS622 mRNA for ascorbate peroxidase, partial cds
DEF=Oryza sativa SS622 mRNA for ascorbate peroxidase, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4940011/11L-ascorbate peroxidase 2, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12693.5.S1_x_at--377--3111Chr07:29582773..29582931 (25 bp)
AATATGCTGCGGATGAGGACGCCTT
LOC_Os07g49400
Os.12693.5.S1_x_at--733--9111Chr07:29582769..29582927 (25 bp)
TGCTGCGGATGAGGACGCCTTCTTT
LOC_Os07g49400
Os.12693.5.S1_x_at--1133--8871Chr07:29582760..29582784 (25 bp)
TGAGGACGCCTTCTTTGCGGATTAC
LOC_Os07g49400
Os.12693.5.S1_x_at--911--9531Chr07:29582749..29582773 (25 bp)
TCTTTGCGGATTACGCCGAGGCCCA
LOC_Os07g49400
Os.12693.5.S1_x_at--267--6531Chr07:29582610..29582634 (25 bp)
GATTTGCTGAGGAATAAGAAGCCTT
LOC_Os07g49400
Os.12693.5.S1_x_at--726--2651Chr07:29582592..29582616 (25 bp)
AAGCCTTTAGAGAGCGGGATATCCG
LOC_Os07g49400
Os.12693.5.S1_x_at--46--3031Chr07:29582558..29582582 (25 bp)
AATGCCGATTTGTATTTTGCGCCTT
LOC_Os07g49400
Os.12693.5.S1_x_at--116--6531Chr07:29582552..29582576 (25 bp)
GATTTGTATTTTGCGCCTTAGAGTC
LOC_Os07g49400
Os.12693.5.S1_x_at--1042--6871Chr07:29582547..29582571 (25 bp)
GTATTTTGCGCCTTAGAGTCAGTAC
LOC_Os07g49400
Os.12693.5.S1_x_at--529--9151Chr07:29582541..29582565 (25 bp)
TGCGCCTTAGAGTCAGTACGATCAA
LOC_Os07g49400
Os.12693.5.S1_x_at--560--6071Chr07:29582532..29582556 (25 bp)
GAGTCAGTACGATCAAGACTGTCGT
LOC_Os07g49400
Target Sequence 
AATATGCTGCGGATGAGGACGCCTTCTTTGCGGATTACGCCGAGGCCCACCTCAAGCTCTCTGAANTGGGATTTGCTGAG
GAATAAGAAGCCTTTAGAGAGCGGGATATCCGCNAAAGATTAATGCCGATTTGTATTTTGCGCCTTAGAGTCAGTACGAT
CAAGACTGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12693.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis