Browse Element(s) Details


Os.12693.1.S1_a_at

Description gb:AB050724.1
DB_XREF= gi:11094300
GEN=APXb
TID=Os.12693.1
CNT=74
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12693 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) APXb mRNA for ascorbate peroxidase, complete cds.
PROD=ascorbate peroxidase
FL= gb:AB050724.1 gb:AK102751.1 gb:AK061715.1 gb:AB053297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4940011/11L-ascorbate peroxidase 2, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49360Os.11557.1.S1_at11/117+29559514..29560830Peroxidase 21 precursor, putative, expressed
LOC_Os07g49370Os.51101.1.S1_at10/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49370OsAffx.13115.1.S1_at1/117+29564377..29570021Glycosyltransferase family 43 protein, expressed
LOC_Os07g49380Os.53339.1.S1_a_at11/117+29574894..29577416PWWP domain containing protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390OsAffx.16770.1.S1_x_at11/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49390Os.52331.1.A1_at8/117+29578160..29581440prephenate dehydratase family protein, expressed
LOC_Os07g49400Os.12693.5.S1_x_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.1.S1_a_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49400Os.12693.3.S1_at11/117+29582054..29584641L-ascorbate peroxidase 2, cytosolic, putative, expressed
LOC_Os07g49410Os.52204.1.S1_at11/117+29588250..29592119Uncharacterized ACR, YagE family COG1723 containing protein, expressed
LOC_Os07g49420OsAffx.10526.1.S1_x_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49420OsAffx.10526.1.S1_at1/117+29596249..29596843retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.20729.1.S1_x_at5/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.5.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49430OsAffx.21171.4.S1_x_at1/117+29597497..29603202retrotransposon protein, putative, unclassified
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12693.1.S1_a_at--500--351Chr07:29582597..29582621 (25 bp)
ATAAGAAGCCTTTAGAGAGCGGGAT
LOC_Os07g49400
Os.12693.1.S1_a_at--727--2651Chr07:29582592..29582616 (25 bp)
AAGCCTTTAGAGAGCGGGATATCCG
LOC_Os07g49400
Os.12693.1.S1_a_at--181--10491Chr07:29582560..29582584 (25 bp)
TTAATGCCGATTTGTATTTTGCGCC
LOC_Os07g49400
Os.12693.1.S1_a_at--45--3031Chr07:29582558..29582582 (25 bp)
AATGCCGATTTGTATTTTGCGCCTT
LOC_Os07g49400
Os.12693.1.S1_a_at--961--4491Chr07:29582555..29582579 (25 bp)
GCCGATTTGTATTTTGCGCCTTAGA
LOC_Os07g49400
Os.12693.1.S1_a_at--115--6531Chr07:29582552..29582576 (25 bp)
GATTTGTATTTTGCGCCTTAGAGTC
LOC_Os07g49400
Os.12693.1.S1_a_at--451--8771Chr07:29582548..29582572 (25 bp)
TGTATTTTGCGCCTTAGAGTCAGTA
LOC_Os07g49400
Os.12693.1.S1_a_at--153--171Chr07:29582545..29582569 (25 bp)
ATTTTGCGCCTTAGAGTCAGTACGA
LOC_Os07g49400
Os.12693.1.S1_a_at--194--10291Chr07:29582543..29582567 (25 bp)
TTTGCGCCTTAGAGTCAGTACGATC
LOC_Os07g49400
Os.12693.1.S1_a_at--530--9151Chr07:29582541..29582565 (25 bp)
TGCGCCTTAGAGTCAGTACGATCAA
LOC_Os07g49400
Os.12693.1.S1_a_at--177--4171Chr07:29582539..29582563 (25 bp)
CGCCTTAGAGTCAGTACGATCAAGA
LOC_Os07g49400
Target Sequence 
ATAAGAAGCCTTTAGAGAGCGGGATATCCGCAAAAGATTAATGCCGATTTGTATTTTGCGCCTTAGAGTCAGTACGATCA
AGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12693.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis