Browse Element(s) Details


OsAffx.13115.1.S1_at

Description tigr:9631.m02923
TID=OsAffx.13115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g077302/11Transferase family protein, expressed
LOC_Os07g493701/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07690Os.51406.1.S1_at9/118+4294380..4295067expressed protein
LOC_Os08g07700OsAffx.5740.1.S1_at11/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07700OsAffx.14566.1.S1_at1/118+4297761..4298288AP2 domain containing protein
LOC_Os08g07710OsAffx.29086.1.S1_at11/118+4305440..4305727hypothetical protein
LOC_Os08g07720OsAffx.29087.1.S1_x_at11/118+4309816..4312201Transferase family protein, expressed
LOC_Os08g07730OsAffx.16883.1.S1_x_at11/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730OsAffx.13115.1.S1_at2/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07730Os.46622.1.S1_x_at1/118+4319543..4323424Transferase family protein, expressed
LOC_Os08g07740Os.49771.1.S1_at9/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07740OsAffx.23994.1.S1_x_at1/118+4327373..4329090Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os08g07760Os.49150.1.S1_at11/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.51084.1.S1_x_at3/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07760Os.12668.1.S1_s_at1/118+4337827..4344158BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os08g07774Os.51084.1.S1_x_at11/118+4346471..4355077NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13115.1.S1_at--493--1171Chr03:17010917..17010941 (25 bp)
AGTAGCAGGGCACAGCGGTCGTCGT
NONE
OsAffx.13115.1.S1_at--547--3291Chr03:17010872..17010896 (25 bp)
CAGCAACGACGATGGTTGGGCTCGT
NONE
OsAffx.13115.1.S1_at--95--1871Chr03:17010867..17010891 (25 bp)
ACGACGATGGTTGGGCTCGTCGTAC
NONE
OsAffx.13115.1.S1_at--272--4811Chr03:17010853..17010877 (25 bp)
GCTCGTCGTACTTCGGCGGGAGTGG
NONE
OsAffx.13115.1.S1_at--510--10591Chr03:17010609..17010633 (25 bp)
TTCTGCCTACGGCTTGCCACCACAG
NONE
OsAffx.13115.1.S1_at--1008--8451Chr03:17010550..17010574 (25 bp)
TGGCCATCGCTCTGCCGTCTCAGGG
NONE
OsAffx.13115.1.S1_at--695--532Chr08:4321658..4321678 (21 bp)
ATCGCTCTGCCGTCTCAGGGAGGCC
LOC_Os08g07730
OsAffx.13115.1.S1_at--552--9492Chr08:4321659..4321679 (21 bp)
TCTGCCGTCTCAGGGAGGCCAAGGA
LOC_Os08g07730
OsAffx.13115.1.S1_at--644--5071Chr03:17010487..17010511 (25 bp)
GCAGCCGCCTGCATCTAACGGGAGA
NONE
OsAffx.13115.1.S1_at--773--1651Chr03:17010485..17010509 (25 bp)
AGCCGCCTGCATCTAACGGGAGAGA
NONE
OsAffx.13115.1.S1_at--416--4176Chr05:10706148..10706167 (20 bp)
CGCCTGCATCTAACGGGAGAGAGAG
NONE
Target Sequence 
AGTAGCAGGGCACAGCGGTCGTCGTCGGGCCAGAGGTGGTCGTCGCAGCAACGACGATGGTTGGGCTCGTCGTACTTCGG
CGGGAGTGGCTCGAACGACGACGACGGGGGGGGGGGGGGGGATGACTCCGACGACTCTCCCGGCCTCACCGCCCCCTCGC
CGGCCTCCTCCCTTCTCGGCTCGCTCCCTGGCCTCCTCACCTCCTCTCTCTCTGGCCTCCCCCGCTCCGGCCGCCCTGCT
ATTGCCGGCATGCTTCGGCCGTTGCCGCTCCGCCCGTCCCGCTCTACCACTGCTGCTTCGCCCCACCGTTCTGCCTACGG
CTTGCCACCACAGCTGCTCCACCTGTGGCTTGCCACCACCACCGCTCTGGCCATCGCTCTGCCGTCTCAGGGAGGCCAAG
GAGGTGCCCGCTGCCGCCGGCGCGCGAGCCGCAGCCGCCTGCATCTAACGGGAGAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis