Browse Element(s) Details


OsAffx.14566.1.S1_at

Description tigr:9633.m00527
TID=OsAffx.14566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0607011/11seven in absentia, putative
LOC_Os08g077001/11AP2 domain containing protein
LOC_Os05g060801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06019OsAffx.4416.1.S1_at2/115+2995876..2996421retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06028OsAffx.4416.1.S1_at2/115+3001526..3002071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06040NANA5+3004717..3005136hypothetical protein
LOC_Os05g06050NANA5+3008942..3011231Core-2/I-Branching enzyme family protein
LOC_Os05g06060OsAffx.14566.2.S1_at11/115+3014115..3015245hypothetical protein
LOC_Os05g06070OsAffx.14566.1.S1_at11/115+3016670..3017698seven in absentia, putative
LOC_Os05g06080OsAffx.4259.1.S1_at9/115+3020176..3021214hypothetical protein
LOC_Os05g06080OsAffx.14566.1.S1_at1/115+3020176..3021214hypothetical protein
LOC_Os05g06090OsAffx.22217.1.S1_x_at1/115+3022404..3022981hypothetical protein
LOC_Os05g06100NANA5+3023940..3025073seven in absentia, putative
LOC_Os05g06110Os.5079.1.S1_at11/115+3028794..3035004Villin-1, putative, expressed
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14566.1.S1_at--640--5851Chr05:3017357..3017381 (25 bp)
GACCACCTCATCATGCTGAACGTGA
LOC_Os05g06070
OsAffx.14566.1.S1_at--558--1751Chr05:3017361..3017385 (25 bp)
ACCTCATCATGCTGAACGTGACGCG
LOC_Os05g06070
OsAffx.14566.1.S1_at--634--412Chr05:3017366..3017390 (25 bp)
ATCATGCTGAACGTGACGCGGGAGC
LOC_Os05g06070
OsAffx.14566.1.S1_at--440--4631Chr05:3017471..3017495 (25 bp)
GCGATGCAATGCGAACTCCTGCTCG
LOC_Os05g06070
OsAffx.14566.1.S1_at--476--4591Chr05:3017481..3017505 (25 bp)
GCGAACTCCTGCTCGTCTCGCGGTT
LOC_Os05g06070
OsAffx.14566.1.S1_at--998--1131Chr05:3017550..3017574 (25 bp)
AGTCGGAGTTCCTCATAGGCTGCAG
LOC_Os05g06070
OsAffx.14566.1.S1_at--211--8051Chr05:3017554..3017578 (25 bp)
GGAGTTCCTCATAGGCTGCAGCGAC
LOC_Os05g06070
OsAffx.14566.1.S1_at--334--10671Chr05:3017558..3017582 (25 bp)
TTCCTCATAGGCTGCAGCGACCTCG
LOC_Os05g06070
OsAffx.14566.1.S1_at--656--5751Chr05:3017585..3017609 (25 bp)
GACGGATTGCCCGATCGCGAGCAGA
LOC_Os05g06070
OsAffx.14566.1.S1_at--1122--4192Chr05:3017594..3017618 (25 bp)
CCCGATCGCGAGCAGAGCTTCCAGT
LOC_Os05g06070
OsAffx.14566.1.S1_at--412--9211Chr05:3017613..3017637 (25 bp)
TCCAGTTCATGGTGCCAAGGTGCGT
LOC_Os05g06070
Target Sequence 
GACCACCTCATCATGCTGAACGTGACGCGGGAGCCGTACGGCCGCGCCGTCTCCGTGCTCTGCATACGACCCCACGCCGC
CGCCGAGCATCAGGTGTCGCCGCCGCCGCCGCCGGCGATGCAATGCGAACTCCTGCTCGTCTCGCGGTTCGGCTACGACG
GCGACGGGGGCCATTGCCGCAGCCACTACCAGAAGTCGGAGTTCCTCATAGGCTGCAGCGACCTCGCCGACGGATTGCCC
GATCGCGAGCAGAGCTTCCAGTTCATGGTGCCAAGGTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis