Browse Element(s) Details


Os.5079.1.S1_at

Description gb:AK073497.1
DB_XREF= gi:32983520
TID=Os.5079.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045E20, full insert sequence.
FL= gb:AK073497.1 gb:AK072095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0611011/11Villin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06040NANA5+3004717..3005136hypothetical protein
LOC_Os05g06050NANA5+3008942..3011231Core-2/I-Branching enzyme family protein
LOC_Os05g06060OsAffx.14566.2.S1_at11/115+3014115..3015245hypothetical protein
LOC_Os05g06070OsAffx.14566.1.S1_at11/115+3016670..3017698seven in absentia, putative
LOC_Os05g06080OsAffx.4259.1.S1_at9/115+3020176..3021214hypothetical protein
LOC_Os05g06080OsAffx.14566.1.S1_at1/115+3020176..3021214hypothetical protein
LOC_Os05g06090OsAffx.22217.1.S1_x_at1/115+3022404..3022981hypothetical protein
LOC_Os05g06100NANA5+3023940..3025073seven in absentia, putative
LOC_Os05g06110Os.5079.1.S1_at11/115+3028794..3035004Villin-1, putative, expressed
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed
LOC_Os05g06140OsAffx.26755.1.S1_at11/115+3047971..3052410Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0030835biological_processnegative regulation of actin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5079.1.S1_at--924--10491Chr05:3034298..3034442 (25 bp)
TTCACAAAAGCTGGAGACACCGGAG
LOC_Os05g06110
Os.5079.1.S1_at--618--5631Chr05:3034433..3034457 (25 bp)
GACACCGGAGAGAAGCCTACGCAAA
LOC_Os05g06110
Os.5079.1.S1_at--1111--5411Chr05:3034444..3034468 (25 bp)
GAAGCCTACGCAAATCATCATCGTC
LOC_Os05g06110
Os.5079.1.S1_at--368--9611Chr05:3034458..3034482 (25 bp)
TCATCATCGTCTTCGCTGCCGAGAA
LOC_Os05g06110
Os.5079.1.S1_at--427--511Chr05:3034463..3034487 (25 bp)
ATCGTCTTCGCTGCCGAGAAGGTCG
LOC_Os05g06110
Os.5079.1.S1_at--360--6711Chr05:3034544..3034568 (25 bp)
GTTCGCCTCGGCCTCTACCGGGAAG
LOC_Os05g06110
Os.5079.1.S1_at--1116--9291Chr05:3034557..3034581 (25 bp)
TCTACCGGGAAGCTACTCAGGGAGA
LOC_Os05g06110
Os.5079.1.S1_at--1097--1991Chr05:3034571..3034595 (25 bp)
ACTCAGGGAGAGATCACCGGCCGCG
LOC_Os05g06110
Os.5079.1.S1_at--245--9431Chr05:3034665..3034689 (25 bp)
TCGTGGAACTCGACGCCGTCCACGG
LOC_Os05g06110
Os.5079.1.S1_at--787--1431Chr05:3034928..3034952 (25 bp)
CAACGAAGAAAACAAAGCACCAAAT
LOC_Os05g06110
Os.5079.1.S1_at--607--10452Chr05:3034964..3034988 (25 bp)
TTAACTAAGGCATGTTTGTTTCAGC
LOC_Os05g06110
Target Sequence 
TTCACAAAAGCTGGAGACACCGGAGAGAAGCCTACGCAAATCATCATCGTCTTCGCTGCCGAGAAGGTCGCCGGGGACAT
CGTCGTCGGAGCCGACCACGCCGGAGCAGCGAGCGGCGGCGAGGACGTTCGCCTCGGCCTCTACCGGGAAGCTACTCAGG
GAGAGATCACCGGCCGCGCTGTCACCGTCGCTGTCGACGCCTTCGCCGTCTCCGAGAAGCCGCTCCTCCGCCTCCTCGTC
GCCGGCGTCGTGGAACTCGACGCCGTCCACGGTGGCGCGGCGGCTCTTCCCGCCCTCGCTGCACGCGTCGGCGGAGGCGG
TTGCCACCGGGACCCCTCGCCGGCGGTGAGCTTCAGCTAACGNCTCACCTGCAACTGCATATGCCTGTACCATTAAGAAT
TTGAGATTCAGATGAAATTCAAAGAACATCGGCCATCTTTTTACAAGGTCCCTAGATTTTCAAATTTAAATTAGGTTTTT
AGAGGAAATTTAAATTAAGTTTCCTCTACTGCAACGAAGAAAACAAAGCACCAAATATGAATATGAATTAACTAAGGCAT
GTTTGTTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis