Browse Element(s) Details


OsAffx.26755.1.S1_at

Description tigr:9633.m00532
TID=OsAffx.26755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0614011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06090OsAffx.22217.1.S1_x_at1/115+3022404..3022981hypothetical protein
LOC_Os05g06100NANA5+3023940..3025073seven in absentia, putative
LOC_Os05g06110Os.5079.1.S1_at11/115+3028794..3035004Villin-1, putative, expressed
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed
LOC_Os05g06140OsAffx.26755.1.S1_at11/115+3047971..3052410Lipase family protein, expressed
LOC_Os05g06150Os.55427.1.S1_at11/115+3061825..3063522pentatricopeptide, putative, expressed
LOC_Os05g06160Os.21893.3.A1_at5/115+3069639..3073374Trehalose-phosphatase family protein, expressed
LOC_Os05g06170OsAffx.14528.3.S1_x_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.3.S1_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170Os.13877.1.S1_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.1.S1_x_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.2.S1_x_at1/115+3074850..3076884hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26755.1.S1_at--27--6691Chr05:3048325..3048349 (25 bp)
GTTCCAGCGCGTGGTCTACCGGTAC
LOC_Os05g06140
OsAffx.26755.1.S1_at--69--7511Chr05:3048315..3048339 (25 bp)
GTGGTCTACCGGTACGACATCGTGC
LOC_Os05g06140
OsAffx.26755.1.S1_at--985--2091Chr05:3048299..3048323 (25 bp)
ACATCGTGCCGAGGGTGCCGTTCGA
LOC_Os05g06140
OsAffx.26755.1.S1_at--77--8491Chr05:3048263..3048287 (25 bp)
TGGCGGACTTCAGGCACGGCGGGAC
LOC_Os05g06140
OsAffx.26755.1.S1_at--1042--8351Chr05:3048246..3048270 (25 bp)
GGCGGGACGTGCGTGTACTACGACG
LOC_Os05g06140
OsAffx.26755.1.S1_at--744--10511Chr05:3048165..3048189 (25 bp)
TTCAACCCCAAGTACATCGTGTCCA
LOC_Os05g06140
OsAffx.26755.1.S1_at--168--511Chr05:3048150..3048174 (25 bp)
ATCGTGTCCATGTACGGCAACGCGT
LOC_Os05g06140
OsAffx.26755.1.S1_at--392--10511Chr05:3048114..3048138 (25 bp)
TTCAAGGCCATGTTCTTGTGGGCGA
LOC_Os05g06140
OsAffx.26755.1.S1_at--1069--851Chr05:3048110..3048134 (25 bp)
AGGCCATGTTCTTGTGGGCGAAAGA
LOC_Os05g06140
OsAffx.26755.1.S1_at--999--291Chr05:3048008..3048032 (25 bp)
ATAGCCCTCGTGACTATGTCAATGC
LOC_Os05g06140
OsAffx.26755.1.S1_at--555--9411Chr05:3048001..3048025 (25 bp)
TCGTGACTATGTCAATGCCATCCGC
LOC_Os05g06140
Target Sequence 
GTTCCAGCGCGTGGTCTACCGGTACGACATCGTGCCGAGGGTGCCGTTCGACGTGCCGCCGGTGGCGGACTTCAGGCACG
GCGGGACGTGCGTGTACTACGACGGGTGGTACGCCGGGAGGACGCTCGCCGCCGGCGAGGACGCACCGAACAAGAACTAC
TTCAACCCCAAGTACATCGTGTCCATGTACGGCAACGCGTGGGGTGACCTGTTCAAGGCCATGTTCTTGTGGGCGAAAGA
GGGGAAGGACTACCGGGAGGGCCCCGTGTCCATCGTCTACCGCGCCGCCGGCCTCCTCTTCCCCGGCCTCGCCTCCCATA
GCCCTCGTGACTATGTCAATGCCATCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis