Browse Element(s) Details


OsAffx.14528.1.S1_x_at

Description tigr:9633.m00306
TID=OsAffx.14528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0380011/11transposon protein, putative, unclassified
LOC_Os03g463404/11pleckstrin homology domain-containing protein, putative, expressed
LOC_Os12g321404/11transposon protein, putative, unclassified
LOC_Os05g061703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03760Os.11774.1.S1_s_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03760Os.11774.1.S1_x_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03770Os.55734.1.S1_at11/115+1644535..1646940expressed protein
LOC_Os05g03780Os.8659.1.S1_at11/115+1653517..1657080cation diffusion facilitator family transporter containing protein, expressed
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03810NANA5+1673273..1675282trehalose-phosphatase family protein
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_x_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830Os.23217.1.S1_s_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840OsAffx.4243.1.S1_at11/115+1685199..1687100Glycosyl hydrolase family 9 protein
LOC_Os05g03850NANA5+1694722..1694979retrotransposon protein, putative, unclassified
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14528.1.S1_x_at--1146--6591Chr05:1670867..1670891 (25 bp)
GATTGTGCAGTCGTTGTCACCAACC
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--980--2072Chr05:1670900..1670924 (25 bp)
ACATTCGCCGTTGTCCAGAGGCAAA
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--911--6513Chr05:1671204..1671228 (25 bp)
GATTTGGCCCTTATTGAGAGTCTGA
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--733--10333Chr05:1671257..1671443 (25 bp)
TTTACACTGTTTGGAGACTCTTCGG
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--1134--93Chr05:1671480..1671504 (25 bp)
ATTCGTGCTCGGGATGCTACAATTA
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--743--9471Chr05:1671558..1671582 (25 bp)
TCTGTAGCTCATACGTTGGATGGAC
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--894--6053Chr05:1671603..1671627 (25 bp)
GAGATTGAGCGCCTAAGACATTACA
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--883--6034Chr05:1671805..1671829 (25 bp)
GAGATGCTGCACTTCAGGAGGCTCA
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--18--994Chr05:1671820..1671844 (25 bp)
AGGAGGCTCATATGTGGCGCACTGA
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--536--5391Chr05:1671921..1671945 (25 bp)
GAAGCAGATGCTTGGGTGTACTATC
LOC_Os05g03800
OsAffx.14528.1.S1_x_at--976--7711Chr05:1671934..1671958 (25 bp)
GGGTGTACTATCTCCATATTGCTAT
LOC_Os05g03800
Target Sequence 
GATTGTGCAGTCGTTGTCACCAACCAGGCCATGACATTCGCCGTTGTCCAGAGGCAAAGCGAGAAGAACAAGATTTGGCC
CTTATTGAGAGTCTGAAAATTGCTGTAATATTGTATGACATAAATTTACACTGTTTGGAGACTCTTCGGGTGAAAGATGA
GGAGTTGCAGAATTTGGCCAACAATATTCGTGCTCGGGATGCTACAATTAAGAAAATAGCAGATAAATTAACACAGACTG
CAGAGGCCGCGGAAGCTGCTGCTTCTGTAGCTCATACGTTGGATGGACATAGAATACTTCTATGTTCAGAGATTGAGCGC
CTAAGACATTACAAGCAATGGAAAGACAAATGGAACAATCCATGCTCATTATTGAGCAAAGAGAAGGATCAATTGCTGAA
AGAAAGAGATGCTGCACTTCAGGAGGCTCATATGTGGCGCACTGAGCTAGGGAAAGCTAGAGAGCAAGCAGTGGTACAAG
AAGCAACTATTGCCAGAGCAGATGAGAAGTTAAGGGCATCTGAAGCAGATGCTTGGGTGTACTATCTCCATATTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14528.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis