Browse Element(s) Details

Os.3373.1.S1_at

Description

gb:AK065180.1
DB_XREF= gi:32975198
TID=Os.3373.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.3373 (NCBI UniGene Cluster)
UG_TITLE=Rice lip19 mRNA for basicleucine zipper protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D17, full insert sequence.
FL= gb:AK065180.1 gb:AK105138.1 gb:AK104844.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g03860	11/11	bZIP transcription factor family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g03800	OsAffx.14528.1.S1_x_at	11/11	5	+	1664890..1671989	transposon protein, putative, unclassified
LOC_Os05g03800	OsAffx.14528.1.S1_at	10/11	5	+	1664890..1671989	transposon protein, putative, unclassified
LOC_Os05g03800	OsAffx.14528.2.S1_x_at	6/11	5	+	1664890..1671989	transposon protein, putative, unclassified
LOC_Os05g03800	OsAffx.14528.3.S1_at	3/11	5	+	1664890..1671989	transposon protein, putative, unclassified
LOC_Os05g03800	OsAffx.14528.3.S1_x_at	3/11	5	+	1664890..1671989	transposon protein, putative, unclassified
LOC_Os05g03800	Os.5212.1.S1_at	1/11	5	+	1664890..1671989	transposon protein, putative, unclassified
LOC_Os05g03810	NA	NA	5	+	1673273..1675282	trehalose-phosphatase family protein
LOC_Os05g03820	Os.12568.2.S1_at	11/11	5	+	1676531..1681049	Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820	Os.12568.1.S1_x_at	11/11	5	+	1676531..1681049	Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820	Os.12568.1.S1_at	11/11	5	+	1676531..1681049	Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830	OsAffx.14529.1.S1_x_at	11/11	5	+	1683019..1685087	Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830	Os.23217.1.S1_s_at	11/11	5	+	1683019..1685087	Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830	OsAffx.14529.1.S1_at	11/11	5	+	1683019..1685087	Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840	OsAffx.4243.1.S1_at	11/11	5	+	1685199..1687100	Glycosyl hydrolase family 9 protein
LOC_Os05g03850	NA	NA	5	+	1694722..1694979	retrotransposon protein, putative, unclassified
LOC_Os05g03860	Os.3373.1.S1_at	11/11	5	+	1695736..1697113	bZIP transcription factor family protein, expressed
LOC_Os05g03870	Os.54175.1.S1_at	11/11	5	+	1698490..1699237	expressed protein
LOC_Os05g03884	OsAffx.2978.2.S1_s_at	11/11	5	+	1702540..1708864	KNOX2 domain containing protein, expressed
LOC_Os05g03884	Os.4162.1.S1_at	11/11	5	+	1702540..1708864	KNOX2 domain containing protein, expressed
LOC_Os05g03900	OsAffx.26722.1.S1_at	11/11	5	+	1721096..1723308	WRKY DNA binding domain containing protein, expressed
LOC_Os05g03900	OsAffx.26722.2.S1_s_at	11/11	5	+	1721096..1723308	WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3373.1.S1_at--170--1069	1	Chr05:1696724..1696748 (25 bp)	TTCCAGTTCTGAGCCACCATGGAGA	LOC_Os05g03860
Os.3373.1.S1_at--1140--83	1	Chr05:1696742..1696766 (25 bp)	ATGGAGAGCTCGCACGCCATGGCCA	LOC_Os05g03860
Os.3373.1.S1_at--413--37	1	Chr05:1696772..1696796 (25 bp)	ATCAATGGCATGGTTGCAGCTGCAT	LOC_Os05g03860
Os.3373.1.S1_at--771--1073	1	Chr05:1696785..1696809 (25 bp)	TTGCAGCTGCATTACAACTAGTAGT	LOC_Os05g03860
Os.3373.1.S1_at--472--371	1	Chr05:1696802..1696826 (25 bp)	CTAGTAGTACTAGCCTCTGTGGTTG	LOC_Os05g03860
Os.3373.1.S1_at--519--947	1	Chr05:1696817..1696841 (25 bp)	TCTGTGGTTGTGTCTGATGATGCTT	LOC_Os05g03860
Os.3373.1.S1_at--1104--81	1	Chr05:1696855..1696879 (25 bp)	ATGGTTTGCTTCATGTTGTTTTCAT	LOC_Os05g03860
Os.3373.1.S1_at--643--747	1	Chr05:1696904..1696928 (25 bp)	GTGTGTTGTAATCTTGTCTAGTCTT	LOC_Os05g03860
Os.3373.1.S1_at--700--131	1	Chr05:1696934..1696958 (25 bp)	AGATGTGTTCATCTCCAGTGCTCCT	LOC_Os05g03860
Os.3373.1.S1_at--90--45	1	Chr05:1696944..1696968 (25 bp)	ATCTCCAGTGCTCCTTGCTAATAAG	LOC_Os05g03860
Os.3373.1.S1_at--719--511	1	Chr05:1697009..1697033 (25 bp)	GCACATGTGTGCTGGTTTGTGATGT	LOC_Os05g03860

Target Sequence

TTCCAGTTCTGAGCCACCATGGAGAGCTCGCACGCCATGGCCATTGGCATCAATGGCATGGTTGCAGCTGCATTACAACT
AGTAGTACTAGCCTCTGTGGTTGTGTCTGATGATGCTTATTATGTTTAATTATGGTTTGCTTCATGTTGTTTTCATTAAT
CTAGACCATTAATAAGCAATGTGTGTTGTAATCTTGTCTAGTCTTATGTGAGATGTGTTCATCTCCAGTGCTCCTTGCTA
ATAAGGGTGGAAGAGAACAATCCGATTTGATGTAATTCTTGGAGAGCACATGTGTGCTGGTTTGTGATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis