Browse Element(s) Details


Os.12568.2.S1_at

Description gb:AK058241.1
DB_XREF= gi:32968259
TID=Os.12568.2
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for gamma-glutamylcysteine synthetase (gcs gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-G10, full insert sequence.
FL= gb:AK058241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2779011/11Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g0382011/11Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27750OsAffx.28630.1.S1_at11/117+16190490..16191819expressed protein
LOC_Os07g27760Os.23200.2.S1_x_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.2.S1_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.1.S1_x_at3/117+16195086..16204224expressed protein
LOC_Os07g27770OsAffx.28632.1.S1_at4/117+16205480..16207506transposon protein, putative, unclassified
LOC_Os07g27780Os.49082.1.S1_at9/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27780OsAffx.14529.1.S1_x_at1/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27790Os.12568.2.S1_at11/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27790Os.12568.1.S1_x_at9/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27800OsAffx.28632.1.S1_at11/117+16218413..16222270transposon protein, putative, unclassified
LOC_Os07g27810Os.37225.1.S1_at10/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27810OsAffx.25952.1.S1_s_at2/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27820OsAffx.20354.1.S1_at3/117+16233830..16236759retrotransposon protein, putative, unclassified
LOC_Os07g27834Os.46610.1.A1_x_at2/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.3347.1.S1_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27834OsAffx.27810.1.S1_x_at1/117+16237966..16246137retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006750biological_processglutathione biosynthesis
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009908biological_processflower development
GO:0010193biological_processresponse to ozone
GO:0046686biological_processresponse to cadmium ion
GO:0009507cellular_componentchloroplast
GO:0004357molecular_functionglutamate-cysteine ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12568.2.S1_at--70--252Chr05:1680982..1681006 (25 bp)
ATATCTTGCAGATGTAATGGCTGGT
LOC_Os05g03820
Os.12568.2.S1_at--557--3632Chr05:1680986..1681010 (25 bp)
CTTGCAGATGTAATGGCTGGTGTAT
LOC_Os05g03820
Os.12568.2.S1_at--1137--8332Chr05:1681000..1681024 (25 bp)
GGCTGGTGTATTTGGTGGTCTCCAT
LOC_Os05g03820
Os.12568.2.S1_at--547--3892Chr05:1681002..1681026 (25 bp)
CTGGTGTATTTGGTGGTCTCCATGA
LOC_Os05g03820
Os.12568.2.S1_at--402--7752Chr05:1681004..1681028 (25 bp)
GGTGTATTTGGTGGTCTCCATGAAA
LOC_Os05g03820
Os.12568.2.S1_at--286--10252Chr05:1681010..1681034 (25 bp)
TTTGGTGGTCTCCATGAAAGTGCCT
LOC_Os05g03820
Os.12568.2.S1_at--1033--8612Chr05:1681012..1681036 (25 bp)
TGGTGGTCTCCATGAAAGTGCCTTT
LOC_Os05g03820
Os.12568.2.S1_at--1069--7712Chr05:1681013..1681037 (25 bp)
GGTGGTCTCCATGAAAGTGCCTTTT
LOC_Os05g03820
Os.12568.2.S1_at--140--7512Chr05:1681014..1681038 (25 bp)
GTGGTCTCCATGAAAGTGCCTTTTT
LOC_Os05g03820
Os.12568.2.S1_at--245--7812Chr05:1681016..1681040 (25 bp)
GGTCTCCATGAAAGTGCCTTTTTAT
LOC_Os05g03820
Os.12568.2.S1_at--77--8972Chr05:1681024..1681048 (25 bp)
TGAAAGTGCCTTTTTATTCGGTACT
LOC_Os05g03820
Target Sequence 
ATATCTTGCAGATGTAATGGCTGGTGTATTTGGTGGTCTCCATGAAAGTGCCTTTTTATTCGGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12568.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis