Browse Element(s) Details


Os.23200.2.S1_x_at

Description gb:AK067938.1
DB_XREF= gi:32977956
TID=Os.23200.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123L24, full insert sequence.
FL= gb:AK067938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2776011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27730Os.56332.1.S1_at1/117+16174137..16177348hypothetical protein
LOC_Os07g27740OsAffx.18957.1.S1_at3/117+16177953..16184448retrotransposon protein, putative, unclassified
LOC_Os07g27750OsAffx.28630.1.S1_at11/117+16190490..16191819expressed protein
LOC_Os07g27760Os.23200.2.S1_x_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.2.S1_at11/117+16195086..16204224expressed protein
LOC_Os07g27760Os.23200.1.S1_x_at3/117+16195086..16204224expressed protein
LOC_Os07g27770OsAffx.28632.1.S1_at4/117+16205480..16207506transposon protein, putative, unclassified
LOC_Os07g27780Os.49082.1.S1_at9/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27780OsAffx.14529.1.S1_x_at1/117+16207453..16208960Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os07g27790Os.12568.2.S1_at11/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27790Os.12568.1.S1_x_at9/117+16211815..16217498Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os07g27800OsAffx.28632.1.S1_at11/117+16218413..16222270transposon protein, putative, unclassified
LOC_Os07g27810Os.37225.1.S1_at10/117+16224811..16228973fiber protein Fb34, putative, expressed
LOC_Os07g27810OsAffx.25952.1.S1_s_at2/117+16224811..16228973fiber protein Fb34, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23200.2.S1_x_at--1110--6751Chr07:16198540..16198564 (25 bp)
GTTACCAGTAGTGAAATGCCCTTGA
LOC_Os07g27760
Os.23200.2.S1_x_at--299--6451Chr07:16197635..16197659 (25 bp)
GATCAGCAGAACACAGCACAACCTT
LOC_Os07g27760
Os.23200.2.S1_x_at--786--1491Chr07:16197621..16197645 (25 bp)
AGCACAACCTTGTTAAGAGCATGAA
LOC_Os07g27760
Os.23200.2.S1_x_at--396--3511Chr07:16197602..16197626 (25 bp)
CATGAAGCAGTCTGGTGATGGCATT
LOC_Os07g27760
Os.23200.2.S1_x_at--170--2371Chr07:16197576..16197600 (25 bp)
AAACCAAGCATCTTACTCGTGTAAT
LOC_Os07g27760
Os.23200.2.S1_x_at--307--5191Chr07:16197382..16197406 (25 bp)
GCAATGATATACCTGCTGCTTTCGA
LOC_Os07g27760
Os.23200.2.S1_x_at--352--4771Chr07:16197368..16197392 (25 bp)
GCTGCTTTCGAGGTCCTTAAGAACA
LOC_Os07g27760
Os.23200.2.S1_x_at--80--191Chr07:16197316..16197340 (25 bp)
ATTTACTTGGTCTTGAGCTAGGCGA
LOC_Os07g27760
Os.23200.2.S1_x_at--65--7911Chr07:16197267..16197291 (25 bp)
GGTTCGCTGTGACTAATCCTTTCAA
LOC_Os07g27760
Os.23200.2.S1_x_at--376--6291Chr07:16197174..16197198 (25 bp)
GATGATATCACTTTGTTCCTACTAC
LOC_Os07g27760
Os.23200.2.S1_x_at--657--10791Chr07:16197162..16197186 (25 bp)
TTGTTCCTACTACTATGTGTCTTGT
LOC_Os07g27760
Target Sequence 
GTTACCAGTAGTGAAATGCCCTTGAAGGTTGCACAGAGTAGTGATGTTTCGAAGTTTATGTCATATATTGAGATCAGCAG
AACACAGCACAACCTTGTTAAGAGCATGAAGCAGTCTGGTGATGGCATTAAAACCAAGCATCTTACTCGTGTAATTGGTA
ACCTTGATAAATTCCATGTAAAACCATATGGAACATTAATAGATGATGAACAGAGGAGACTGCGTGAACATTGGTTGAAC
ATATCCTGCAATGATATACCTGCTGCTTTCGAGGTCCTTAAGAACAATAGGGTGACAACAGAGAAACTGAGAAATTTACT
TGGTCTTGAGCTAGGCGAAAAGAATGTATCTATCATGAGAAAGGTTCGCTGTGACTAATCCTTTCAATTCTTGTTTGAAA
GTCTTTTGATTTTCCAGATCAAGGTATTTTACTTGAATGTATGAAAAATATAGTGGATGATATCACTTTGTTCCTACTAC
TATGTGTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23200.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis