Browse Element(s) Details


OsAffx.25952.1.S1_s_at

Description tigr:9639.m00061
TID=OsAffx.25952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0160011/11Macrophage migration inhibitory factor family protein, expressed
LOC_Os03g472403/11expressed protein
LOC_Os02g301602/11retrotransposon protein, putative, unclassified
LOC_Os07g278102/11fiber protein Fb34, putative, expressed
LOC_Os09g084402/11MtN3/saliva family protein
LOC_Os02g173042/11NB-ARC domain containing protein, expressed
LOC_Os12g016802/11Macrophage migration inhibitory factor family protein
LOC_Os09g087302/11Pumilio-family RNA binding repeat containing protein
LOC_Os11g314102/11retrotransposon protein, putative, unclassified
LOC_Os08g369501/11expressed protein
LOC_Os06g059701/11hypothetical protein
LOC_Os05g477701/11Protein kinase domain containing protein, expressed
LOC_Os08g274901/11hypothetical protein
LOC_Os04g524301/11expressed protein
LOC_Os08g192401/11hypothetical protein
LOC_Os01g338691/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006954biological_processinflammatory response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0003723molecular_functionRNA binding
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25952.1.S1_s_at--336--1952Chr12:412181..412202 (22 bp)
ACTGGAAATATGCTTCTGAATGCGG
LOC_Os12g01680
OsAffx.25952.1.S1_s_at--880--51744Chr11:353760..353784 (25 bp)
GAATGCGGGGCTTTTAACTATTTGC
LOC_Os11g01600
OsAffx.25952.1.S1_s_at--1124--3349Chr12:616909..616933 (25 bp)
ATAACTATTTGCCACCCCTATCTCA
NONE
OsAffx.25952.1.S1_s_at--1156--1949Chr12:616915..616939 (25 bp)
ATTTGCCACCCCTATCTCAATGACA
NONE
OsAffx.25952.1.S1_s_at--687--8653Chr12:10454594..10454616 (23 bp)
TGTGTCTATGACGTGTGGGTTCAGC
NONE
OsAffx.25952.1.S1_s_at--116--10252Chr12:412206..412229 (24 bp)
TTTGGCATGCTTGAGTTGAGAGCTC
LOC_Os12g01680
OsAffx.25952.1.S1_s_at--927--8271Chr11:353935..353959 (25 bp)
GGCATGCTTGAGTTGAGAGCTCTGT
LOC_Os11g01600
OsAffx.25952.1.S1_s_at--463--3531Chr11:353937..353961 (25 bp)
CATGCTTGAGTTGAGAGCTCTGTGT
LOC_Os11g01600
OsAffx.25952.1.S1_s_at--378--3631Chr11:353941..353965 (25 bp)
CTTGAGTTGAGAGCTCTGTGTGTGT
LOC_Os11g01600
OsAffx.25952.1.S1_s_at--1030--7591Chr11:354008..354032 (25 bp)
GGGCAGGCCTAAATTCAGTGTTTTA
LOC_Os11g01600
OsAffx.25952.1.S1_s_at--692--851Chr11:354012..354036 (25 bp)
AGGCCTAAATTCAGTGTTTTAGCAC
LOC_Os11g01600
Target Sequence 
ACTGGAAATATGCTTCTGAATGCGGGGCTTTTAACTATTTGCCATGTTTAGATTTGGCAAATAACTATTTGCCACCCCTA
TCTCAATGACATGTGGGTCCACATGTGTCTATGACGTGTGGGTTCAGCGGCAAAAAGTTAATTGCCACATCTAAATGTGG
CAAATGGTTAAATATCGGTCTGAATGCAATTTGGCATGCTTGAGTTGAGAGCTCTGTGTGTGTGTTTTGTCTATTAAGGT
TTGTCCCTGTATTAATGGGTGTGGGGGGCAGGCCTAAATTCAGTGTTTTAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25952.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis