Browse Element(s) Details


OsAffx.11747.1.S1_x_at

Description tigr:9639.m00059
TID=OsAffx.11747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sodiumcalcium exchanger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0158011/11Sodium/calcium exchanger protein
LOC_Os10g300703/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01540OsAffx.31540.2.S1_s_at11/1111+307804..309616expressed protein
LOC_Os11g01540OsAffx.31540.2.S1_at10/1111+307804..309616expressed protein
LOC_Os11g01550Os.56072.1.S1_at7/1111+313616..314451LOB domain protein 12, putative, expressed
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11747.1.S1_x_at--991--7371Chr11:333656..333680 (25 bp)
GTGACGCTCCTGTCGCTCGGGAAAG
LOC_Os11g01580
OsAffx.11747.1.S1_x_at--982--4311Chr11:333472..333496 (25 bp)
CCATTGACAGGGTGAACTTCTACCG
LOC_Os11g01580
OsAffx.11747.1.S1_x_at--858--9332Chr10:15285560..15285584 (25 bp)
TCGCCGCCGGCGAGGTGACAATCTG
LOC_Os10g30070
OsAffx.11747.1.S1_x_at--679--10571Chr11:333260..333284 (25 bp)
TTCTCCGAGCTCTGCAACGTAGCAG
LOC_Os11g01580
OsAffx.11747.1.S1_x_at--862--932Chr10:15285723..15285747 (25 bp)
AGAGACGAAGTTCTACGGCGACCAA
LOC_Os10g30070
OsAffx.11747.1.S1_x_at--798--1212Chr10:15285731..15285755 (25 bp)
AGTTCTACGGCGACCAAGAACCACT
LOC_Os10g30070
OsAffx.11747.1.S1_x_at--1087--10651Chr11:333176..333200 (25 bp)
TTCCTCCACGTGGTTGCCGGCGGAG
LOC_Os11g01580
OsAffx.11747.1.S1_x_at--1146--7631Chr11:333150..333174 (25 bp)
GGGAGTCAGCGCATGTCAGGAAACT
LOC_Os11g01580
OsAffx.11747.1.S1_x_at--405--7111Chr11:333146..333170 (25 bp)
GTCAGCGCATGTCAGGAAACTTGCA
LOC_Os11g01580
OsAffx.11747.1.S1_x_at--1094--8152Chr04:22093964..22093987 (24 bp)
GGAAACTTGCAATTCGCTCACAGCT
NONE
OsAffx.11747.1.S1_x_at--282--10751Chr11:333126..333150 (25 bp)
TTGCAATTCGCTCACAGCTCACACG
LOC_Os11g01580
Target Sequence 
GTGACGCTCCTGTCGCTCGGGAAAGGCGCGCCGGACGCGCTCTCCACCATCGCGTCGTTCGCCTCCGGCGGGGGAGAGGG
GGAGGCCACCGCCGTGTGGCTCAACGGCGTGCTGGGGAGCGCGATGCTCGTGTCCTCCGCCGTGCTCGGCATCATCGGCG
TCCACCTCGGCGCGCGCGGGGTCGCCATTGACAGGGTGAACTTCTACCGCGACGCGTCTTTCCTCCTCGTCTCCCTCGTC
GCTGTGGCCGTCGTCCTCGCCGCCGGCGAGGTGACAATCTGGGGCGCCCTCGCCTTCACCTCCCTCTACGTCGTCTACGT
CGTCGCCGTCGCCTTCACCCACGGCCGCTCCCCGAGCAAAGGCCACGACGCGGAGGCGGACCACACGGCGGACGCCTTCT
CCGAGCTCTGCAACGTAGCAGAGACGAAGTTCTACGGCGACCAAGAACCACTCCTCCCCGAAACCACCCCGCCGGTCGAC
TTCCTCCACGTGGTTGCCGGCGGAGAGGGAGTCAGCGCATGTCAGGAAACTTGCAATTCGCTCACAGCTCACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11747.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis