Browse Element(s) Details


Os.5521.1.A1_at

Description gb:AK121033.1
DB_XREF= gi:37990656
TID=Os.5521.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050K24, full insert sequence.
FL= gb:AK121033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0160011/11Macrophage migration inhibitory factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006954biological_processinflammatory response
GO:0009613biological_processresponse to pest, pathogen or parasite
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5521.1.A1_at--657--5851Chr11:354084..354108 (25 bp)
GACCACAGCAGTACTATATTTGATG
LOC_Os11g01600
Os.5521.1.A1_at--1139--9731Chr11:354131..354155 (25 bp)
TAATTAGGGCTTTGCATTTGGTGGT
LOC_Os11g01600
Os.5521.1.A1_at--784--4831Chr11:354163..354187 (25 bp)
GCTAAAGTGGTTTGGTACTTGCATA
LOC_Os11g01600
Os.5521.1.A1_at--33--7851Chr11:354176..354200 (25 bp)
GGTACTTGCATATCAAAGGGTCTTT
LOC_Os11g01600
Os.5521.1.A1_at--393--10232Chr12:412539..412563 (25 bp)
TTTGGTTTGGTTCTTAAGCATGAAA
NONE
Os.5521.1.A1_at--717--4992Chr12:412556..412580 (25 bp)
GCATGAAACTTTGCTGGTGTCTAGT
NONE
Os.5521.1.A1_at--125--10293Chr12:412565..412589 (25 bp)
TTTGCTGGTGTCTAGTTTTTGGTGT
NONE
Os.5521.1.A1_at--476--10392Chr12:412581..412605 (25 bp)
TTTTGGTGTTGTGTTTGGCCCAAGT
NONE
Os.5521.1.A1_at--162--10851Chr11:354262..354286 (25 bp)
TTGGCCCAAGTAGGGTGCCTTGCTG
LOC_Os11g01600
Os.5521.1.A1_at--826--7271Chr11:354276..354300 (25 bp)
GTGCCTTGCTGCCTAATTTATTATG
LOC_Os11g01600
Os.5521.1.A1_at--888--151Chr11:354295..354319 (25 bp)
ATTATGACCTCTCTTTTGTTGTGCT
LOC_Os11g01600
Target Sequence 
GACCACAGCAGTACTATATTTGATGGCTAGAAGTAGGAACCACAAGTTAATTAGGGCTTTGCATTTGGTGGTTGTTGGTG
CTAAAGTGGTTTGGTACTTGCATATCAAAGGGTCTTTGTCTGTTTGGTTTGGTTCTTAAGCATGAAACTTTGCTGGTGTC
TAGTTTTTGGTGTTGTGTTTGGCCCAAGTAGGGTGCCTTGCTGCCTAATTTATTATGACCTCTCTTTTGTTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5521.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis