Browse Element(s) Details


Os.52259.1.S1_at

Description gb:AK065945.1
DB_XREF= gi:32975963
TID=Os.52259.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049F17, full insert sequence.
FL= gb:AK065945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0159011/11Major Facilitator Superfamily protein, expressed
LOC_Os12g015703/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52259.1.S1_at--1124--8912Chr12:347796..347820 (25 bp)
TGACCTCTGAGCTCTTTGGACCAAA
LOC_Os12g01570
Os.52259.1.S1_at--9--10871Chr11:344295..344319 (25 bp)
TTGGATCACTTCTCTACGGTCAGAT
LOC_Os11g01590
Os.52259.1.S1_at--1107--3432Chr12:347885..347909 (25 bp)
CAGATTGCTGCCCTAGTGTATGATG
LOC_Os12g01570
Os.52259.1.S1_at--858--1791Chr11:344370..344394 (25 bp)
ACCGCAATGGCATGGTTGACACTAT
LOC_Os11g01590
Os.52259.1.S1_at--98--2871Chr11:344414..344438 (25 bp)
AAGTGCTACTCAACCACATTCTTTG
LOC_Os11g01590
Os.52259.1.S1_at--806--6612Chr12:348034..348058 (25 bp)
GTTGGTGTCAAGCATAATCCTATTC
LOC_Os12g01570
Os.52259.1.S1_at--407--6831Chr11:344551..344575 (25 bp)
GTTTCGACTTGACAGAACTCCTTGA
LOC_Os11g01590
Os.52259.1.S1_at--1160--3611Chr11:344571..344595 (25 bp)
CTTGATCTGTTCCTTACTGCTATGA
LOC_Os11g01590
Os.52259.1.S1_at--741--5551Chr11:344594..344618 (25 bp)
GAAACCATGGCTACTTTGTACAAGT
LOC_Os11g01590
Os.52259.1.S1_at--699--5032Chr12:348283..348307 (25 bp)
GCAGTTCCATTTACAGGGCATTGAT
NONE
Os.52259.1.S1_at--889--6651Chr11:344746..344770 (25 bp)
GTTGACATCCAAGATGCCACGGAAT
LOC_Os11g01590
Target Sequence 
TGACCTCTGAGCTCTTTGGACCAAACAGCATTGGCATGAACCATAACATCCTCATCACCAACATCCCTCTTGGATCACTT
CTCTACGGTCAGATTGCTGCCCTAGTGTATGATGCAAATGGCCTAAAGATGTCAGTAATAGACAACCGCAATGGCATGGT
TGACACTATGGTGGTTTGCATGGGGCCAAAGTGCTACTCAACCACATTCTTTGTGTGGGGTTGTATCACATTTCCTGGGG
TTGGTGTCAAGCATAATCCTATTCTTGAGAACAAGAACAGCTTACAGTGCTGCTGGTGGTCAGCAAGTTGTAAACACCTT
AGCGAAGTTTCGACTTGACAGAACTCCTTGATCTGTTCCTTACTGCTATGAAACCATGGCTACTTTGTACAAGTTTTGAT
TGAGTTCTAGGTGAACTAGGTTAGTAGATAACATGCATGTAAATAAAATCATCAGAGAGAATCGCAGAGAAAGAAGCAGA
TTAGGATAGCAGTTCCATTTACAGGGCATTGATGTTGAGTTGTTGACATCCAAGATGCCACGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis