Browse Element(s) Details


OsAffx.25952.1.S1_x_at

Description tigr:9639.m00061
TID=OsAffx.25952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATE efflux family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0160010/11Macrophage migration inhibitory factor family protein, expressed
LOC_Os12g016802/11Macrophage migration inhibitory factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01570Os.6019.1.S1_at11/1111+328051..331822expressed protein
LOC_Os11g01580OsAffx.11747.1.S1_x_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01580OsAffx.11747.1.S1_at11/1111+333096..334289Sodium/calcium exchanger protein
LOC_Os11g01590Os.52259.1.S1_at11/1111+340402..344822Major Facilitator Superfamily protein, expressed
LOC_Os11g01600Os.5521.1.A1_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_s_at11/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01600OsAffx.25952.1.S1_x_at10/1111+351202..354323Macrophage migration inhibitory factor family protein, expressed
LOC_Os11g01610OsAffx.31541.1.S1_s_at11/1111+355675..356661PRA1 family protein, expressed
LOC_Os11g01620Os.47316.1.S1_at11/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01620Os.47316.2.S1_at9/1111+358314..361653Leucine Rich Repeat family protein, expressed
LOC_Os11g01630OsAffx.18625.3.S1_x_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.3.S1_at11/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.18625.4.S1_x_at7/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630OsAffx.5875.1.S1_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01630Os.27102.1.S1_x_at1/1111+361999..365411RNA polymerase Rpb1, domain 2 family protein
LOC_Os11g01650OsAffx.18625.5.S1_s_at11/1111+368398..368806hypothetical protein
LOC_Os11g01660OsAffx.6959.1.S1_x_at11/1111+369387..369803hypothetical protein
LOC_Os11g01670OsAffx.18626.1.S1_at11/1111+371081..372297hypothetical protein
LOC_Os11g01670OsAffx.15580.1.S1_at1/1111+371081..372297hypothetical protein
LOC_Os11g01690NANA11+375049..376541hypothetical protein
LOC_Os11g01700NANA11+377352..381272retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006954biological_processinflammatory response
GO:0009613biological_processresponse to pest, pathogen or parasite
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25952.1.S1_x_at--210--4952Chr12:411416..411440 (25 bp)
GCATTGCCTCTATCCTGGAGTCAAA
LOC_Os12g01680
OsAffx.25952.1.S1_x_at--568--7091Chr11:353211..353235 (25 bp)
GTCAAAGCTATCCATTCCCAAGGGC
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--1018--4111Chr11:353236..353260 (25 bp)
CGCTTCTACCTCAAGTTCTACGATT
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--79--10571NONE
TTCTACGATTCCAAGCGCTCGGACT
NONE
OsAffx.25952.1.S1_x_at--296--3252Chr12:411785..411806 (22 bp)
CAAGCGCTCGGACTTTGGATGGAAC
LOC_Os12g01680
OsAffx.25952.1.S1_x_at--316--6191Chr11:353595..353619 (25 bp)
GATGGAACGGCACCACCTTTTAGGT
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--323--7891Chr11:353617..353641 (25 bp)
GGTTAAACTGTATGCCTGTGGCTTC
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--1097--4471Chr11:353630..353654 (25 bp)
GCCTGTGGCTTCAAGATGCATGAAA
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--420--251Chr11:353669..353693 (25 bp)
ATATCTTGTTCATTGCCTATTGGAG
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--378--5611Chr11:353694..353718 (25 bp)
GACAATGCAGTCGATGTATCAGTTT
LOC_Os11g01600
OsAffx.25952.1.S1_x_at--204--9751Chr11:353718..353742 (25 bp)
TAATGTCAACAAGAGTCACCGTGGA
LOC_Os11g01600
Target Sequence 
GCATTGCCTCTATCCTGGAGTCAAAGCTATCCATTCCCAAGGGCCGCTTCTACCTCAAGTTCTACGATTCCAAGCGCTCG
GACTTTGGATGGAACGGCACCACCTTTTAGGTTAAACTGTATGCCTGTGGCTTCAAGATGCATGAAACCTAAGAATTCCT
AATATCTTGTTCATTGCCTATTGGAGGACAATGCAGTCGATGTATCAGTTTAATGTCAACAAGAGTCACCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25952.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis