Browse Element(s) Details


Os.27102.1.S1_x_at

Description gb:AK072148.1
DB_XREF= gi:32982171
TID=Os.27102.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129D08, full insert sequence.
FL= gb:AK072148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0253011/11expressed protein
LOC_Os03g329102/11retrotransposon protein, putative, unclassified
LOC_Os07g108501/11retrotransposon protein, putative, unclassified
LOC_Os11g220101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g402201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g148901/11retrotransposon protein, putative, unclassified
LOC_Os11g438101/11hypothetical protein
LOC_Os11g227901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g479201/11hypothetical protein
LOC_Os08g081801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g347301/11retrotransposon protein, putative, unclassified
LOC_Os02g476801/11hypothetical protein
LOC_Os12g354101/11AT hook motif-containing protein, putative
LOC_Os07g253201/11hypothetical protein
LOC_Os11g016301/11RNA polymerase Rpb1, domain 2 family protein
LOC_Os07g355301/11hypothetical protein
LOC_Os05g271901/11hypothetical protein
LOC_Os03g232501/11hypothetical protein
LOC_Os05g224501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein
LOC_Os04g02539NANA4+928966..929187NA
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein
LOC_Os04g02560OsAffx.25840.1.S1_at11/114+946556..947133expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27102.1.S1_x_at--532--4111Chr04:927364..927388 (25 bp)
CGCTGTTTAATGAACTACGGAGATA
LOC_Os04g02530
Os.27102.1.S1_x_at--1047--981107Chr12:13477265..13477290 (25 bp)
TAAAATTTGATCAGTTATGCTAGGT
NONE
Os.27102.1.S1_x_at--231--5239Chr12:8489114..8489404 (25 bp)
GAATAGCAAAATTGGCTTTATGCAA
NONE
Os.27102.1.S1_x_at--623--5114Chr11:7454868..7454892 (25 bp)
GCAAATAAACCATTAGCCTTTCATT
NONE
Os.27102.1.S1_x_at--184--4453Chr11:7454883..7454907 (25 bp)
GCCTTTCATTGAATATCCTCTATCA
NONE
Os.27102.1.S1_x_at--548--5236Chr11:7454893..7454917 (25 bp)
GAATATCCTCTATCATATGCATCGT
NONE
Os.27102.1.S1_x_at--375--10133Chr04:927489..927513 (25 bp)
TATGCATCGTTGTTGTGGTGGCTTG
LOC_Os04g02530
Os.27102.1.S1_x_at--506--19124Chr11:7454939..7454963 (25 bp)
ACGGTTGGTACTCACTCTTGCTATT
NONE
Os.27102.1.S1_x_at--619--3232Chr11:7454951..7454975 (25 bp)
CACTCTTGCTATTTACAAATTCCAT
NONE
Os.27102.1.S1_x_at--356--9832Chr11:7454964..7454988 (25 bp)
TACAAATTCCATCAGAAGCCGGTGA
NONE
Os.27102.1.S1_x_at--1082--1015110Chr12:16951361..16951438 (25 bp)
TATCTATTTCTGCTTTTGGGATGTA
NONE
Target Sequence 
CGCTGTTTAATGAACTACGGAGATAAAATTTGATCAGTTATGCTAGGTCTTAGGCTTGTGAAAAGAATAGCAAAATTGGC
TTTATGCAAATAAACCATTAGCCTTTCATTGAATATCCTCTATCATATGCATCGTTGTTGTGGTGGCTTGCTGAGTACGG
TTGGTACTCACTCTTGCTATTTACAAATTCCATCAGAAGCCGGTGATGAAGTCTCGGATGACCCATATGCTTACTACCAG
GAGGGTGAAGAAGATGGTGGCGCTTAGTAGGTNTTAGTTACGGTCGTCGCCTGTGGCAATGGCGTCGCCGCTGCCTTGAT
TCCGCTGCTTATCTATTTCTGCTTTTGGGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis