Browse Element(s) Details


Os.27727.1.S1_s_at

Description gb:CB644862
DB_XREF= gi:29639853
DB_XREF=OSJNEb06E04.r
CLONE=OSJNEb06E04
TID=Os.27727.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27727 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177700.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0251011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02450OsAffx.25839.1.S1_at11/114+879014..881296Leucine Rich Repeat family protein
LOC_Os04g02460Os.52238.1.S1_at2/114+884186..885139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02470NANA4+886002..886529expressed protein
LOC_Os04g02480OsAffx.13620.1.S1_at11/114+889546..889890hypothetical protein
LOC_Os04g02490Os.10659.1.S1_at5/114+890345..891202hypothetical protein
LOC_Os04g02490Os.14980.1.A1_at3/114+890345..891202hypothetical protein
LOC_Os04g02490Os.10659.1.S1_s_at3/114+890345..891202hypothetical protein
LOC_Os04g02500Os.17572.1.S1_at11/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.26875.1.S1_at2/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.32255.1.A1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02500OsAffx.8626.1.S1_at1/114+895931..900505G-patch domain containing protein, expressed
LOC_Os04g02510Os.27727.1.S1_s_at11/114+904471..908190Zinc finger, C2H2 type family protein, expressed
LOC_Os04g02520OsAffx.13622.1.S1_at11/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520Os.54925.1.S1_at2/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02520OsAffx.28137.1.S1_at1/114+912253..920506Leucine Rich Repeat family protein
LOC_Os04g02530Os.27102.1.S1_x_at11/114+924992..927884expressed protein
LOC_Os04g02530Os.46444.1.S1_x_at1/114+924992..927884expressed protein
LOC_Os04g02539NANA4+928966..929187NA
LOC_Os04g02550Os.54925.1.S1_at11/114+931724..933844expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0031225cellular_componentanchored to membrane
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27727.1.S1_s_at--928--2851Chr04:907915..907939 (25 bp)
AAGGGCCATACTGCCGTGCTTCGTC
LOC_Os04g02510
Os.27727.1.S1_s_at--1120--4891Chr04:907932..907956 (25 bp)
GCTTCGTCGTCATCTACCGTGTTGT
LOC_Os04g02510
Os.27727.1.S1_s_at--801--431Chr04:907943..907967 (25 bp)
ATCTACCGTGTTGTCCCCGAGTGAA
LOC_Os04g02510
Os.27727.1.S1_s_at--369--7411Chr04:907950..907974 (25 bp)
GTGTTGTCCCCGAGTGAAGCAGCAA
LOC_Os04g02510
Os.27727.1.S1_s_at--636--8711Chr04:907954..907978 (25 bp)
TGTCCCCGAGTGAAGCAGCAAACAA
LOC_Os04g02510
Os.27727.1.S1_s_at--690--5391Chr04:907965..907989 (25 bp)
GAAGCAGCAAACAACACTCAAAATC
LOC_Os04g02510
Os.27727.1.S1_s_at--363--3171Chr04:907994..908018 (25 bp)
AATTGTATCAACCTTTTGTATTAGC
LOC_Os04g02510
Os.27727.1.S1_s_at--783--6871Chr04:908011..908035 (25 bp)
GTATTAGCATAATCGTCCAGCAATT
LOC_Os04g02510
Os.27727.1.S1_s_at--293--4951Chr04:908017..908041 (25 bp)
GCATAATCGTCCAGCAATTTCAACA
LOC_Os04g02510
Os.27727.1.S1_s_at--725--7271Chr04:908025..908049 (25 bp)
GTCCAGCAATTTCAACATCATATAA
LOC_Os04g02510
Os.27727.1.S1_s_at--423--6031Chr04:908078..908102 (25 bp)
GAGATGAACTTAATTTTTGTCTAGT
LOC_Os04g02510
Target Sequence 
AAGGGCCATACTGCCGTGCTTCGTCGTCATCTACCGTGTTGTCCCCGAGTGAAGCAGCAAACAACACTCAAAATCAATTA
ATTGTATCAACCTTTTGTATTAGCATAATCGTCCAGCAATTTCAACATCATATAAATGTATAAATTAAATGCATTTTGAG
GGAGAGATGAACTTAATTTTTGTCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27727.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis