Browse Element(s) Details


OsAffx.8626.1.S1_at

Description gb:XM_354429.1
DB_XREF= gi:35191324
TID=OsAffx.8626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g227802/11hypothetical protein
LOC_Os07g363002/11F-box domain containing protein, expressed
LOC_Os03g244001/11hypothetical protein
LOC_Os04g025001/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22740OsAffx.8205.1.S1_at11/1110+11491121..11492666hypothetical protein
LOC_Os10g22750Os.46834.1.S1_at11/1110+11494547..11495515expressed protein
LOC_Os10g22760OsAffx.222.1.S1_at11/1110+11498343..11499747transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22770OsAffx.31801.1.S1_at9/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.28844.1.S1_at5/1110+11504486..11506836hypothetical protein
LOC_Os10g22770OsAffx.31801.4.S1_at1/1110+11504486..11506836hypothetical protein
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22810NANA10+11522432..11524070hypothetical protein
LOC_Os10g22820OsAffx.30507.1.S1_at11/1110+11529025..11530397hypothetical protein
LOC_Os10g22820OsAffx.3274.1.S1_at2/1110+11529025..11530397hypothetical protein
LOC_Os10g22830OsAffx.30508.1.S1_at11/1110+11532563..11533984hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8626.1.S1_at--467--4851Chr08:20098047..20098071 (25 bp)
GCTATCGACGGGTACGTCTGACGAA
NONE
OsAffx.8626.1.S1_at--14--1933Chr08:20098054..20098078 (25 bp)
ACGGGTACGTCTGACGAAGTCACCA
NONE
OsAffx.8626.1.S1_at--1143--51141Chr11:22458917..22458941 (25 bp)
GCACAACGCCGTTAAATCCTGGAAA
NONE
OsAffx.8626.1.S1_at--472--44958Chr12:19823408..19823432 (25 bp)
GCCGTTAAATCCTGGAAAATTCGCT
NONE
OsAffx.8626.1.S1_at--989--4311Chr08:20098154..20098178 (25 bp)
CCATAGGGAGTCGAACCAAGGATCT
NONE
OsAffx.8626.1.S1_at--565--1151Chr08:20098162..20098181 (20 bp)
AGTCGAACCAAGGATCTCAGCCCAG
NONE
OsAffx.8626.1.S1_at--344--5431NONE
GAACCAAGGATCTCAGCCCAGCGGC
NONE
OsAffx.8626.1.S1_at--906--5812Chr09:5641469..5641525 (25 bp)
GACCCCGCTGCGAGAGATCAAGAGA
NONE
OsAffx.8626.1.S1_at--1107--6171Chr08:20099076..20099100 (25 bp)
GAGGAGAAGCACTAGCTCGATTGTT
NONE
OsAffx.8626.1.S1_at--668--5111Chr08:20099084..20099108 (25 bp)
GCACTAGCTCGATTGTTTTCGACGA
NONE
OsAffx.8626.1.S1_at--1012--6711Chr08:20099098..20099122 (25 bp)
GTTTTCGACGAGGAGATAAGGGATA
NONE
Target Sequence 
GCTATCGACGGGTACGTCTGACGAAGTCACCACAGGTGCCTCGCTGTCGACGGGTACGTCGCCTACCACTGAAAGCACAA
CGCCGTTAAATCCTGGAAAATTCGCTCCCATAGGGAGTCGAACCAAGGATCTCAGCCCAGCGGCCACTGCCGCTTCTCCC
GCCGCCTCCCCAGCCCGGCGGTCGCCGCCGCTTCTCCTGCCGCCTCCCCAGCCCGGCCACCGCCTCCATCGCCCGGCCGC
CGCTTCTCCCGCCGCCTTCCTGGCCCGGTCGCCGCCGACCCCGCTGCGAGAGATCAAGAGAAAGAGGACAGAGAGAGATA
GCGAGAGAAGAGACGCGAGGAGAAGCACTAGCTCGATTGTTTTCGACGAGGAGATAAGGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis