Browse Element(s) Details


OsAffx.30508.1.S1_at

Description tigr:9638.m01934
TID=OsAffx.30508.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2283011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22780OsAffx.30505.1.S1_at7/1110+11509753..11511602hypothetical protein
LOC_Os10g22780OsAffx.8626.1.S1_at2/1110+11509753..11511602hypothetical protein
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22810NANA10+11522432..11524070hypothetical protein
LOC_Os10g22820OsAffx.30507.1.S1_at11/1110+11529025..11530397hypothetical protein
LOC_Os10g22820OsAffx.3274.1.S1_at2/1110+11529025..11530397hypothetical protein
LOC_Os10g22830OsAffx.30508.1.S1_at11/1110+11532563..11533984hypothetical protein
LOC_Os10g22840OsAffx.8201.1.S1_at10/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22840OsAffx.8201.1.S1_x_at10/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22840OsAffx.27937.1.S1_at1/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22850NANA10+11545534..11545737hypothetical protein
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed
LOC_Os10g22880NANA10+11556207..11557209hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30508.1.S1_at--365--8811Chr10:11533041..11533065 (25 bp)
TGTTGCCGAGCCGTGCGGCCAAGAA
LOC_Os10g22830
OsAffx.30508.1.S1_at--158--1371Chr10:11532960..11532984 (25 bp)
AGAGCGACGCGTGCTGGCAAGTCAC
LOC_Os10g22830
OsAffx.30508.1.S1_at--910--4111Chr10:11532911..11532935 (25 bp)
CGCGCGGACGTTTAGGAAGACCCTG
LOC_Os10g22830
OsAffx.30508.1.S1_at--884--931Chr10:11532898..11532922 (25 bp)
AGGAAGACCCTGGAGTTCATCGCGT
LOC_Os10g22830
OsAffx.30508.1.S1_at--513--6071Chr10:11532886..11532910 (25 bp)
GAGTTCATCGCGTGGTACTCGAAGC
LOC_Os10g22830
OsAffx.30508.1.S1_at--600--8611Chr10:11532861..11532885 (25 bp)
TGGTGACCACCATGAGGCGCGCTGA
LOC_Os10g22830
OsAffx.30508.1.S1_at--1079--6171Chr10:11532827..11532851 (25 bp)
GAGGAGAGAGCCACACCCGCATGGC
LOC_Os10g22830
OsAffx.30508.1.S1_at--16--1651Chr10:11532778..11532802 (25 bp)
AGCGACTGCCATGAGATCCTCGAGG
LOC_Os10g22830
OsAffx.30508.1.S1_at--533--10871Chr10:11532676..11532700 (25 bp)
TTGGCGGCGATGCTTGTCAGTCTAA
LOC_Os10g22830
OsAffx.30508.1.S1_at--484--5971Chr10:11532643..11532667 (25 bp)
GAGAACGCAGCCGTGGAGCTTGCAA
LOC_Os10g22830
OsAffx.30508.1.S1_at--648--4551Chr10:11532612..11532636 (25 bp)
GCGCGGACAAAACTCGCTACGGTGA
LOC_Os10g22830
Target Sequence 
TGTTGCCGAGCCGTGCGGCCAAGAAGCCCCGCGCCGCGGACATCAAGATCAAGAGACGACACCCCCTCGACGACGGCGAG
GAGAGCGACGCGTGCTGGCAAGTCACCACCACCGACAACCCGCACGACGCCGCGCGGACGTTTAGGAAGACCCTGGAGTT
CATCGCGTGGTACTCGAAGCTGGTGACCACCATGAGGCGCGCTGAGGAGCTGGAGAGGAGAGAGCCACACCCGCATGGCG
CCCTCAAGGATCTCTTCCCGAGCAGCGACTGCCATGAGATCCTCGAGGAGCTCTACGGCGGCGGCTGGAGGACAGTGCAG
GTGGCGCTCGACGACGGCGGTGGGGGGCGCGCCGGCCGCACGACGTTGGCGGCGATGCTTGTCAGTCTAAGGCAGAGGGA
GAACGCAGCCGTGGAGCTTGCAAGGCGCCGCGCGGACAAAACTCGCTACGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis