Browse Element(s) Details


OsAffx.8201.1.S1_at

Description gb:NM_196143.1
DB_XREF= gi:37533645
TID=OsAffx.8201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OJ1341F06.3), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2284010/11retrotransposon protein, putative, unclassified
LOC_Os07g208502/11retrotransposon protein, putative, unclassified
LOC_Os12g220501/11retrotransposon protein, putative, unclassified
LOC_Os12g100601/11retrotransposon protein, putative, unclassified
LOC_Os05g081701/11retrotransposon protein, putative, unclassified
LOC_Os04g192901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22790NANA10+11514015..11514408hypothetical protein
LOC_Os10g22800NANA10+11516058..11518527retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22810NANA10+11522432..11524070hypothetical protein
LOC_Os10g22820OsAffx.30507.1.S1_at11/1110+11529025..11530397hypothetical protein
LOC_Os10g22820OsAffx.3274.1.S1_at2/1110+11529025..11530397hypothetical protein
LOC_Os10g22830OsAffx.30508.1.S1_at11/1110+11532563..11533984hypothetical protein
LOC_Os10g22840OsAffx.8201.1.S1_at10/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22840OsAffx.8201.1.S1_x_at10/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22840OsAffx.27937.1.S1_at1/1110+11537355..11538673retrotransposon protein, putative, unclassified
LOC_Os10g22850NANA10+11545534..11545737hypothetical protein
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed
LOC_Os10g22880NANA10+11556207..11557209hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8201.1.S1_at--795--10551NONE
TTCTTCCTGAAGTTTTGAAAGGGAT
NONE
OsAffx.8201.1.S1_at--286--7955Chr12:12410784..12410808 (25 bp)
GGATATATGCTTTGACAGAATTTGA
LOC_Os12g22050
OsAffx.8201.1.S1_at--1150--6411Chr10:11537870..11537894 (25 bp)
GATCTTAGATATGAATCACCTAAAG
LOC_Os10g22840
OsAffx.8201.1.S1_at--123--3791Chr10:11537787..11537811 (25 bp)
CTCGGTTGAGTTAGTGCCTTGGACA
LOC_Os10g22840
OsAffx.8201.1.S1_at--698--6071Chr10:11537780..11537804 (25 bp)
GAGTTAGTGCCTTGGACATCATTTT
LOC_Os10g22840
OsAffx.8201.1.S1_at--1154--3932Chr04:10709755..10709775 (21 bp)
CGGCTTGGTTATAATATCACCTAGG
LOC_Os04g19290
OsAffx.8201.1.S1_at--1104--3051Chr10:11537611..11537635 (25 bp)
AATTATTGAGGGAAGTTGAAGCCGA
LOC_Os10g22840
OsAffx.8201.1.S1_at--1030--2991Chr10:11537519..11537543 (25 bp)
AATGATGTGCTACTGATATACAATG
LOC_Os10g22840
OsAffx.8201.1.S1_at--1056--7911Chr10:11537464..11537488 (25 bp)
GGTTGGTAACTTTGAGGCATGTCTC
LOC_Os10g22840
OsAffx.8201.1.S1_at--322--2532Chr12:5328696..5328719 (24 bp)
AACTTTGAGGCATGTCTCTCGGGAG
LOC_Os12g10060
OsAffx.8201.1.S1_at--389--9852Chr07:12060601..12060786 (25 bp)
TACAAGCCGATGGTACAAGATATTG
LOC_Os07g20850
Target Sequence 
TTCTTCCTGAAGTTTTGAAAGGGATAGTTGGGAAGTGGATATATGCTTTGACAGAATTTGATCTTAGATATGAATCACCT
AAAGCAGTCAAGGGGCAGGCCATAGCCGATTTTATTGTTGAACATCGAGATGATTCAATCGGCTCGGTTGAGTTAGTGCC
TTGGACATCATTTTTTGATGGATCAGTTTGCACTCATGGTTGTGGCATCGGCTTGGTTATAATATCACCTAGGGGAGCAA
GTTTTGAGTTTGCTTATACTATTAAACCCTATGCAACTAATAATCAGGCTGAGTATGAAGCAGTTCTCAAGGGGTTGCAA
TTATTGAGGGAAGTTGAAGCCGATACTATTGAAATAATGGGTGATTCATTGTTGGTGATCAATCAGTTGGTAGGGGAGTA
TGAATGCAAAAATGATGTGCTACTGATATACAATGAAAAGTGCCAAGAATTAATGAATAGTTTTTGGTTGGTAACTTTGA
GGCATGTCTCTCGGGAGCAGAATGTTGAAGCTAATGATTTGGCTCAGGGGGCGTTAGGGTACAAGCCGATGGTACAAGAT
ATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis