Browse Element(s) Details


OsAffx.27937.1.S1_at

Description tigr:9634.m03265
TID=OsAffx.27937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3457011/11hypothetical protein
LOC_Os04g173402/11retrotransposon protein, putative, unclassified
LOC_Os10g247001/11retrotransposon protein, putative, unclassified
LOC_Os10g228401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34510NANA6+20080452..20083772transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520OsAffx.27929.1.S1_at11/116+20084774..20085595CAF1 family ribonuclease containing protein
LOC_Os06g34530NANA6+20087573..20088145Zinc finger, C3HC4 type family protein
LOC_Os06g34540NANA6+20092407..20093057hypothetical protein
LOC_Os06g34550OsAffx.27931.2.S1_at11/116+20093445..20093960hypothetical protein
LOC_Os06g34550OsAffx.27931.2.S1_x_at11/116+20093445..20093960hypothetical protein
LOC_Os06g34560OsAffx.27942.1.S1_at10/116+20097737..20099499Zinc finger, C3HC4 type family protein
LOC_Os06g34564OsAffx.20927.1.S1_x_at9/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.20927.1.S1_at8/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.17778.2.S1_at2/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.29316.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.14776.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.6537.1.S1_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570OsAffx.27937.1.S1_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.27937.2.S1_s_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.17323.1.S1_at1/116+20105011..20111110hypothetical protein
LOC_Os06g34580OsAffx.22699.1.S1_x_at1/116+20111705..20116213retrotransposon protein, putative, unclassified
LOC_Os06g34580OsAffx.8201.1.S1_x_at1/116+20111705..20116213retrotransposon protein, putative, unclassified
LOC_Os06g34590OsAffx.31829.1.S1_at11/116+20117370..20119153hypothetical protein
LOC_Os06g34600OsAffx.15923.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34600OsAffx.8794.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34610NANA6+20125202..20125871expressed protein
LOC_Os06g34620NANA6+20130647..20131171Zinc finger, C3HC4 type family protein
LOC_Os06g34630OsAffx.5005.1.S1_at10/116+20133624..20134277hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27937.1.S1_at--789--6931Chr06:20110527..20110551 (25 bp)
GTAGTGTTTCTACCGATGATTCAGA
LOC_Os06g34570
OsAffx.27937.1.S1_at--210--6571Chr06:20110544..20110568 (25 bp)
GATTCAGACTCGAGCACATCGAAGG
LOC_Os06g34570
OsAffx.27937.1.S1_at--936--2511Chr06:20110670..20110694 (25 bp)
AACTTCCAGGACCAAGTCGACTACG
LOC_Os06g34570
OsAffx.27937.1.S1_at--917--7211Chr06:20110685..20110709 (25 bp)
GTCGACTACGGTGTTCATCAAGCGC
LOC_Os06g34570
OsAffx.27937.1.S1_at--805--371Chr06:20110701..20110725 (25 bp)
ATCAAGCGCTGATCAACCAGTCAGG
LOC_Os06g34570
OsAffx.27937.1.S1_at--16--9071Chr06:20110728..20110752 (25 bp)
TGCTTGTCAACACCCTGACTAACAT
LOC_Os06g34570
OsAffx.27937.1.S1_at--265--8431Chr06:20110800..20110824 (25 bp)
GGCCAACATTTCTTCCTGAGGGTGT
LOC_Os06g34570
OsAffx.27937.1.S1_at--693--1472Chr06:20110860..20110884 (25 bp)
AGCAGCCTGTTTCTAATATACCTCC
LOC_Os06g34570
OsAffx.27937.1.S1_at--671--9753Chr10:12364576..12364595 (20 bp)
TAATATACCTCCAGGGCAGCCGATG
LOC_Os10g24700
OsAffx.27937.1.S1_at--700--10612Chr06:20110906..20110930 (25 bp)
TTCGGCTTCTAGACCAGGTGCATCA
LOC_Os06g34570
OsAffx.27937.1.S1_at--655--1771Chr06:20110948..20110972 (25 bp)
ACCGGTTAATCCGTACATGCTAAGC
LOC_Os06g34570
Target Sequence 
GTAGTGTTTCTACCGATGATTCAGACTCGAGCACATCGAAGGGCGACAAGAATGCCAAAGATGGCAAGGATAAAGGCGAT
AAAGACAAAAGTGAAGAGCCCAAGGATGATGAGGCTGGGGAAGAAGAGCCATTGGAATTCAATAACTTCCAGGACCAAGT
CGACTACGGTGTTCATCAAGCGCTGATCAACCAGTCAGGGGTGCTTGTCAACACCCTGACTAACATGATTAAATCTGTGG
TCGATGGGACAATAGCTGAGCATCAAGTTAAAGGGCCAACATTTCTTCCTGAGGGTGTGTTTCCACAATATAGGAATTTG
GTGACCGGCAACCAGCAGCCTGTTTCTAATATACCTCCAGGGCAGCCGATGGCGTCGGCTTCGGCTTCTAGACCAGGTGC
ATCATCATCGGCACAAAGATCACCGGTTAATCCGTACATGCTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis