Browse Element(s) Details

OsAffx.31829.1.S1_at

Description

tigr:9634.m03267
TID=OsAffx.31829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34590	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34540	NA	NA	6	+	20092407..20093057	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_x_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34560	OsAffx.27942.1.S1_at	10/11	6	+	20097737..20099499	Zinc finger, C3HC4 type family protein
LOC_Os06g34564	OsAffx.20927.1.S1_x_at	9/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.20927.1.S1_at	8/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.17778.2.S1_at	2/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.29316.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.14776.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.6537.1.S1_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570	OsAffx.27937.1.S1_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.27937.2.S1_s_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.17323.1.S1_at	1/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34580	OsAffx.22699.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34580	OsAffx.8201.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34590	OsAffx.31829.1.S1_at	11/11	6	+	20117370..20119153	hypothetical protein
LOC_Os06g34600	OsAffx.15923.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34600	OsAffx.8794.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34610	NA	NA	6	+	20125202..20125871	expressed protein
LOC_Os06g34620	NA	NA	6	+	20130647..20131171	Zinc finger, C3HC4 type family protein
LOC_Os06g34630	OsAffx.5005.1.S1_at	10/11	6	+	20133624..20134277	hypothetical protein
LOC_Os06g34640	NA	NA	6	+	20137223..20137693	Zinc finger, C3HC4 type family protein
LOC_Os06g34650	Os.51533.1.S1_at	11/11	6	+	20142948..20143669	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660	Os.56170.1.S1_at	10/11	6	+	20144121..20147102	glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660	OsAffx.5006.1.S1_at	10/11	6	+	20144121..20147102	glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.31829.1.S1_at--642--199	1	Chr06:20118156..20118180 (25 bp)	ACTCCTGTTCCTGAGTCAAGTGAAC	LOC_Os06g34590
OsAffx.31829.1.S1_at--1118--169	1	Chr06:20118089..20118109 (21 bp)	ACCAACTCCTGCCATACCTGTTTTA	LOC_Os06g34590
OsAffx.31829.1.S1_at--683--919	1	Chr06:20117991..20118100 (25 bp)	TGCCATACCTGTTTTAGCCAATATA	LOC_Os06g34590
OsAffx.31829.1.S1_at--975--169	1	Chr06:20117976..20118000 (25 bp)	AGCCAATATATTCTCCATTGACATC	LOC_Os06g34590
OsAffx.31829.1.S1_at--660--631	1	Chr06:20117813..20117963 (25 bp)	GATGAAGACAGATTCCTGGAAATCC	LOC_Os06g34590
OsAffx.31829.1.S1_at--547--941	1	Chr06:20117688..20117712 (25 bp)	TCGTCGTGAAAGAAGATATCTCGAA	LOC_Os06g34590
OsAffx.31829.1.S1_at--617--1	1	Chr06:20117607..20117631 (25 bp)	ATTGGAAGTCGGTCCAAGTTCCACT	LOC_Os06g34590
OsAffx.31829.1.S1_at--262--209	1	Chr06:20117575..20117599 (25 bp)	ACATAGAACAGCTGAACGCTCGGAA	LOC_Os06g34590
OsAffx.31829.1.S1_at--830--547	1	Chr06:20117546..20117570 (25 bp)	GAACTTTTAGCCGAGTTGGAACAAT	LOC_Os06g34590
OsAffx.31829.1.S1_at--732--661	1	Chr06:20117532..20117556 (25 bp)	GTTGGAACAATGCAACGCACAAATT	LOC_Os06g34590
OsAffx.31829.1.S1_at--984--921	1	Chr06:20117441..20117465 (25 bp)	TCATTTGTCAAATACTTAACCGAAT	LOC_Os06g34590

Target Sequence

ACTCCTGTTCCTGAGTCAAGTGAACATACTCCATCGGCTACGGGTAGCCATCATGTGGAGGAAGAGGTAGCACCAACTCC
TGCCATACCTGTTTTAGCCAATATATTCTCCATTGACATCAGGCAATTTATGGATGAAGACAGATTCCTGGAAATCCATG
ACCAACTCCCAGATGAACTAGCCGATGTCATTACTCCAGCAGCATATCTTGAACAGCATCGGCTCAAGCTTGAGAAAGCT
AAACAAAGGATTGCCGATCGTCGTGAAAGAAGATATCTCGAAGCAACCATCCAAGCTAGCAGAGCTTCTATCAATGAAGA
AAAGGCAAAACTTGATGAATTGGAAGTCGGTCCAAGTTCCACTCAAGCCAACATAGAACAGCTGAACGCTCGGAAGATAG
AACTTTTAGCCGAGTTGGAACAATGCAACGCACAAATTGCCATTGAAGAGCAGAAGCTTGCCGATCTGCCCAAAGCCACT
GAAGACCAGAGATCAAAGCTGAAATCATTTGTCAAATACTTAACCGAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis