Browse Element(s) Details


OsAffx.29316.1.S1_x_at

Description tigr:9630.m02375
TID=OsAffx.29316.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g253608/11hypothetical protein
LOC_Os05g151902/11hypothetical protein
LOC_Os06g345641/11Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os12g283101/11hypothetical protein
LOC_Os03g318001/11hypothetical protein
LOC_Os12g258401/11hypothetical protein
LOC_Os12g113301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g360701/11hypothetical protein
LOC_Os11g122401/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25300NANA2+14753100..14753504hypothetical protein
LOC_Os02g25310OsAffx.12189.1.S1_at11/112+14755685..14757928Zinc knuckle family protein
LOC_Os02g25310OsAffx.12189.2.S1_at1/112+14755685..14757928Zinc knuckle family protein
LOC_Os02g25320NANA2+14758787..14759077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25330NANA2+14760353..14764854transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25340OsAffx.19950.1.S1_at1/112+14768621..14770567hypothetical protein
LOC_Os02g25340OsAffx.15648.1.S1_at1/112+14768621..14770567hypothetical protein
LOC_Os02g25350NANA2+14771289..14772413hypothetical protein
LOC_Os02g25360OsAffx.29316.1.S1_x_at8/112+14776593..14778118hypothetical protein
LOC_Os02g25370NANA2+14782511..14784953transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25380Os.46306.1.S1_x_at2/112+14787834..14790925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25390Os.24831.3.S1_s_at11/112+14797384..14800070retrotransposon protein, putative, unclassified
LOC_Os02g25390Os.24831.1.S1_x_at6/112+14797384..14800070retrotransposon protein, putative, unclassified
LOC_Os02g25390Os.24831.3.S1_x_at4/112+14797384..14800070retrotransposon protein, putative, unclassified
LOC_Os02g25390Os.23706.1.A1_x_at1/112+14797384..14800070retrotransposon protein, putative, unclassified
LOC_Os02g25400Os.45721.1.S1_x_at2/112+14801180..14803305retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29316.1.S1_x_at--171--491Chr02:14778064..14778088 (25 bp)
ATCGGAGTATATCTTCCGACAAGAT
LOC_Os02g25360
OsAffx.29316.1.S1_x_at--76--9451Chr02:14778063..14778087 (25 bp)
TCGGAGTATATCTTCCGACAAGATC
LOC_Os02g25360
OsAffx.29316.1.S1_x_at--51--3971Chr02:14778062..14778086 (25 bp)
CGGAGTATATCTTCCGACAAGATCG
LOC_Os02g25360
OsAffx.29316.1.S1_x_at--1009--8031Chr02:14778061..14778085 (25 bp)
GGAGTATATCTTCCGACAAGATCGA
LOC_Os02g25360
OsAffx.29316.1.S1_x_at--793--77520Chr12:14986908..14986930 (23 bp)
GGTGATCGAGATACGCCTACTCCTG
LOC_Os12g25840
OsAffx.29316.1.S1_x_at--962--9355Chr12:17773068..17773404 (25 bp)
TCGACCAGTCGGTTACAGCAATCTC
NONE
OsAffx.29316.1.S1_x_at--114--4095Chr08:14067920..14067944 (25 bp)
CGACCAGTCGGTTACAGCAATCTCA
NONE
OsAffx.29316.1.S1_x_at--457--5635Chr08:14067946..14067970 (25 bp)
GACACCTAACGCGACAATCAACATT
NONE
Target Sequence 
ATCGGAGTATATCTTCCGACAAGATCGANNNCNNNNNCATNNANANNNNNNNNTANNNANANNNANNNANNTNCNNNANG
TNNNNNNNNNGGTGATCGAGATACGCCTACTCCTGNTCNTCGACCAGTCGGTTACAGCAATCTCANGACACCTAACGCGA
CAATCAACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29316.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis