Browse Element(s) Details

Os.24831.3.S1_x_at

Description

gb:NM_184569.1
DB_XREF= gi:34896227
GEN=P0676G08.23
TID=Os.24831.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.17 (OJ1014_G12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0676G08.23 (P0676G08.23), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g29070	11/11	retrotransposon protein, putative, unclassified
LOC_Os01g37570	10/11	retrotransposon protein, putative, unclassified
LOC_Os09g06870	9/11	retrotransposon protein, putative, unclassified
LOC_Os05g17240	9/11	retrotransposon protein, putative, unclassified
LOC_Os04g14050	9/11	retrotransposon protein, putative, unclassified
LOC_Os08g24100	9/11	retrotransposon protein, putative, unclassified
LOC_Os05g19430	9/11	retrotransposon protein, putative, unclassified
LOC_Os09g09000	9/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g17220	9/11	retrotransposon protein, putative, unclassified
LOC_Os08g22940	9/11	retrotransposon protein, putative, unclassified
LOC_Os08g12110	9/11	retrotransposon protein, putative, unclassified
LOC_Os09g04570	9/11	retrotransposon protein, putative, unclassified
LOC_Os05g20800	9/11	retrotransposon protein, putative, unclassified
LOC_Os10g18730	9/11	retrotransposon protein, putative, unclassified
LOC_Os01g35400	9/11	retrotransposon protein, putative, unclassified
LOC_Os09g09020	9/11	retrotransposon protein, putative, unclassified
LOC_Os09g09080	9/11	retrotransposon protein, putative, unclassified
LOC_Os04g05240	9/11	retrotransposon protein, putative, unclassified
LOC_Os03g33050	8/11	retrotransposon protein, putative, unclassified
LOC_Os05g17580	8/11	retrotransposon protein, putative, unclassified
LOC_Os12g18180	8/11	retrotransposon protein, putative, unclassified
LOC_Os12g25600	8/11	retrotransposon protein, putative, unclassified
LOC_Os05g39030	8/11	retrotransposon protein, putative, unclassified
LOC_Os07g17880	8/11	retrotransposon protein, putative, unclassified
LOC_Os01g21500	8/11	retrotransposon protein, putative, unclassified
LOC_Os02g23828	8/11	retrotransposon protein, putative, unclassified
LOC_Os04g19410	8/11	retrotransposon protein, putative, unclassified
LOC_Os04g29500	8/11	retrotransposon protein, putative, unclassified
LOC_Os05g17720	8/11	retrotransposon protein, putative, unclassified
LOC_Os02g25530	8/11	retrotransposon protein, putative, unclassified
LOC_Os04g06402	8/11	retrotransposon protein, putative, unclassified
LOC_Os03g32970	7/11	retrotransposon protein, putative, unclassified
LOC_Os12g33800	7/11	retrotransposon protein, putative, unclassified
LOC_Os09g13140	7/11	retrotransposon protein, putative, unclassified
LOC_Os08g24080	7/11	retrotransposon protein, putative, unclassified
LOC_Os12g18050	7/11	retrotransposon protein, putative, unclassified
LOC_Os07g47890	7/11	retrotransposon protein, putative, unclassified
LOC_Os12g14010	7/11	retrotransposon protein, putative, unclassified
LOC_Os12g17630	7/11	retrotransposon protein, putative, unclassified
LOC_Os12g25590	7/11	retrotransposon protein, putative, unclassified
LOC_Os06g32390	7/11	retrotransposon protein, putative, unclassified
LOC_Os08g45260	7/11	retrotransposon protein, putative, unclassified
LOC_Os04g04830	7/11	retrotransposon protein, putative, unclassified
LOC_Os05g17700	7/11	retrotransposon protein, putative, unclassified
LOC_Os08g20952	7/11	retrotransposon protein, putative, unclassified
LOC_Os05g26300	7/11	retrotransposon protein, putative, unclassified
LOC_Os03g23230	7/11	retrotransposon protein, putative, unclassified
LOC_Os05g52090	6/11	hypothetical protein
LOC_Os09g15920	6/11	retrotransposon protein, putative, unclassified
LOC_Os09g23840	6/11	retrotransposon protein, putative, unclassified
LOC_Os02g14340	6/11	retrotransposon protein, putative, unclassified
LOC_Os05g08270	6/11	retrotransposon protein, putative, unclassified
LOC_Os03g23140	6/11	retrotransposon protein, putative, unclassified
LOC_Os05g22850	6/11	retrotransposon protein, putative, unclassified
LOC_Os03g26329	6/11	retrotransposon protein, putative, unclassified
LOC_Os10g11560	6/11	retrotransposon protein, putative, unclassified
LOC_Os03g26560	6/11	retrotransposon protein, putative, unclassified
LOC_Os01g40900	6/11	retrotransposon protein, putative, unclassified
LOC_Os06g31750	6/11	retrotransposon protein, putative, unclassified
LOC_Os07g24720	6/11	retrotransposon protein, putative, unclassified
LOC_Os04g13840	6/11	retrotransposon protein, putative, unclassified
LOC_Os10g03150	6/11	retrotransposon protein, putative, unclassified
LOC_Os10g20050	6/11	retrotransposon protein, putative, unclassified
LOC_Os12g28930	6/11	retrotransposon protein, putative, unclassified
LOC_Os12g16980	6/11	retrotransposon protein, putative, unclassified
LOC_Os05g18060	5/11	retrotransposon protein, putative, unclassified
LOC_Os06g18730	5/11	retrotransposon protein, putative, unclassified
LOC_Os07g25850	5/11	retrotransposon protein, putative, unclassified
LOC_Os10g17210	5/11	retrotransposon protein, putative, unclassified
LOC_Os05g20650	5/11	retrotransposon protein, putative, unclassified
LOC_Os04g13870	5/11	retrotransposon protein, putative, unclassified
LOC_Os04g38110	5/11	retrotransposon protein, putative, unclassified
LOC_Os06g32770	5/11	retrotransposon protein, putative, unclassified
LOC_Os06g31850	5/11	retrotransposon protein, putative, unclassified
LOC_Os12g11180	5/11	retrotransposon protein, putative, unclassified
LOC_Os05g18030	5/11	retrotransposon protein, putative, unclassified
LOC_Os10g24270	5/11	retrotransposon protein, putative, unclassified
LOC_Os06g32090	5/11	retrotransposon protein, putative, unclassified
LOC_Os07g14960	5/11	retrotransposon protein, putative, unclassified
LOC_Os02g18240	5/11	retrotransposon protein, putative, unclassified
LOC_Os12g26820	4/11	retrotransposon protein, putative, unclassified
LOC_Os08g27380	4/11	retrotransposon protein, putative, unclassified
LOC_Os04g05180	4/11	retrotransposon protein, putative, unclassified
LOC_Os02g25390	4/11	retrotransposon protein, putative, unclassified
LOC_Os08g24540	4/11	retrotransposon protein, putative, unclassified
LOC_Os01g24180	4/11	retrotransposon protein, putative, unclassified
LOC_Os04g53900	4/11	retrotransposon protein, putative, unclassified
LOC_Os09g09190	4/11	retrotransposon protein, putative, unclassified
LOC_Os10g16780	3/11	retrotransposon protein, putative, unclassified
LOC_Os11g31210	3/11	retrotransposon protein, putative, unclassified
LOC_Os11g35170	3/11	retrotransposon protein, putative, unclassified
LOC_Os04g13390	1/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g29020	NA	NA	1	+	16575262..16576884	hypothetical protein
LOC_Os01g29030	NA	NA	1	+	16580739..16581173	hypothetical protein
LOC_Os01g29040	Os.46314.2.S1_x_at	2/11	1	+	16582386..16585385	retrotransposon protein, putative, unclassified
LOC_Os01g29040	OsAffx.16524.1.S1_at	1/11	1	+	16582386..16585385	retrotransposon protein, putative, unclassified
LOC_Os01g29050	OsAffx.15648.1.S1_at	1/11	1	+	16587107..16593858	hypothetical protein
LOC_Os01g29050	OsAffx.22452.1.S1_x_at	1/11	1	+	16587107..16593858	hypothetical protein
LOC_Os01g29060	Os.48015.1.A1_x_at	1/11	1	+	16594371..16595182	retrotransposon protein, putative, unclassified
LOC_Os01g29070	Os.24831.3.S1_s_at	11/11	1	+	16600740..16603480	retrotransposon protein, putative, unclassified
LOC_Os01g29070	Os.24831.3.S1_x_at	11/11	1	+	16600740..16603480	retrotransposon protein, putative, unclassified
LOC_Os01g29070	Os.24831.1.S1_x_at	4/11	1	+	16600740..16603480	retrotransposon protein, putative, unclassified
LOC_Os01g29080	OsAffx.10530.1.S1_at	11/11	1	+	16610459..16611378	retrotransposon protein, putative, unclassified
LOC_Os01g29090	OsAffx.10529.1.S1_at	11/11	1	+	16612056..16612451	retrotransposon protein, putative, unclassified
LOC_Os01g29100	OsAffx.23442.1.S1_at	11/11	1	+	16612788..16615501	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24831.3.S1_x_at--958--561	61	Chr12:20359179..20359203 (25 bp)	GACAGTTGACCCAGCACCTCCTAAG	LOC_Os12g33800
Os.24831.3.S1_x_at--1055--175	47	Chr12:9721421..9721445 (25 bp)	ACCTCCTAAGCCATGGTGGCAGAGT	LOC_Os12g16980
Os.24831.3.S1_x_at--157--567	60	Chr12:9721641..9721665 (25 bp)	GACATGTTTTCTGTGCGAAGGTACA	LOC_Os12g16980
Os.24831.3.S1_x_at--883--783	1	Chr01:16601060..16601084 (25 bp)	GGTACAAACCATGTGCTCAAGGATT	LOC_Os01g29070
Os.24831.3.S1_x_at--454--973	89	Chr12:20359450..20359473 (24 bp)	TCAAGGATTGCCAACTCAGTGTGTT	LOC_Os12g33800
Os.24831.3.S1_x_at--157--347	88	Chr12:20359465..20359489 (25 bp)	CAGTGTGTTGTTGACCAAGACCGCA	LOC_Os12g33800
Os.24831.3.S1_x_at--814--881	91	Chr12:20359473..20359497 (25 bp)	TGTTGACCAAGACCGCAGAAATCCA	LOC_Os12g33800
Os.24831.3.S1_x_at--101--505	86	Chr12:20359487..20359511 (25 bp)	GCAGAAATCCAACGAACAACCCTAC	LOC_Os12g33800
Os.24831.3.S1_x_at--490--261	3	Chr02:14908370..14908394 (25 bp)	AACCCTACGGTTGTCTCATCAGCTA	LOC_Os02g25530
Os.24831.3.S1_x_at--1145--871	88	Chr12:20359515..20359539 (25 bp)	TGTCTCATCAGCTAGTCAGCTCCAA	LOC_Os12g33800
Os.24831.3.S1_x_at--917--307	68	Chr12:9721840..9721864 (25 bp)	AATAATACCTTCAGCACCAACCATT	LOC_Os12g16980

Target Sequence

GACAGTTGACCCAGCACCTCCTAAGCCATGGTGGCAGAGTATCTGATAGTGAAGGGTCAGATCAAGTCTCCTCGGATGAT
GAAGATGAGTCTCCCCGACATCTCGGCGAGGAAGAAATGGAATCAAAGGCATGCACCCGTTGTGGAGAAATTGGACACGT
TGCTAGCATGTGTCTCACACTCTGCCCTCATTGTGAGGAAGACCATCCACCAGGTGAATGTCCCACCCGCAAGGTGACAT
GTTTTCTGTGCGAAGGTACAAACCATGTGCTCAAGGATTGCCAACTCAGTGTGTTGTTGACCAAGACCGCAGAAATCCAA
CGAACAACCCTACGGTTGTCTCATCAGCTAGTCAGCTCCAATAGCAACATCGACAATATCATCCACAACACCAATGCTCC
TCCTGCTCCACCTGACTCTGCAATAAATCATAGCAATAATACCTTCAGCACCAACCATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis