Browse Element(s) Details


OsAffx.16524.1.S1_at

Description tigr:9635.m03193
TID=OsAffx.16524.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g290401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29000OsAffx.13882.2.S1_at2/111+16562566..16568164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29000OsAffx.25917.1.S1_at2/111+16562566..16568164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29000OsAffx.24330.2.S1_at1/111+16562566..16568164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29000OsAffx.22629.1.S1_at1/111+16562566..16568164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29020NANA1+16575262..16576884hypothetical protein
LOC_Os01g29030NANA1+16580739..16581173hypothetical protein
LOC_Os01g29040Os.46314.2.S1_x_at2/111+16582386..16585385retrotransposon protein, putative, unclassified
LOC_Os01g29040OsAffx.16524.1.S1_at1/111+16582386..16585385retrotransposon protein, putative, unclassified
LOC_Os01g29050OsAffx.15648.1.S1_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29050OsAffx.22452.1.S1_x_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29060Os.48015.1.A1_x_at1/111+16594371..16595182retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_s_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_x_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.1.S1_x_at4/111+16600740..16603480retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16524.1.S1_at--740--3751Chr07:19355060..19355084 (25 bp)
CTCTCGGATCCAACTACGTCGTGGG
NONE
OsAffx.16524.1.S1_at--132--3931Chr07:19354796..19354819 (24 bp)
CGGCGGAGGTTATGGCCGCCTGCAA
NONE
OsAffx.16524.1.S1_at--356--271Chr07:19354769..19354793 (25 bp)
ATATGTTTTGGCCATTGTCGAGGAG
NONE
OsAffx.16524.1.S1_at--832--10091Chr07:19354768..19354792 (25 bp)
TATGTTTTGGCCATTGTCGAGGAGA
NONE
OsAffx.16524.1.S1_at--1014--731Chr07:19354767..19354791 (25 bp)
ATGTTTTGGCCATTGTCGAGGAGAG
NONE
OsAffx.16524.1.S1_at--114--8791Chr07:19354766..19354790 (25 bp)
TGTTTTGGCCATTGTCGAGGAGAGA
NONE
OsAffx.16524.1.S1_at--389--10411Chr07:19354764..19354788 (25 bp)
TTTTGGCCATTGTCGAGGAGAGATC
NONE
OsAffx.16524.1.S1_at--818--10231Chr07:19354763..19354787 (25 bp)
TTTGGCCATTGTCGAGGAGAGATCC
NONE
OsAffx.16524.1.S1_at--545--10871Chr07:19354762..19354786 (25 bp)
TTGGCCATTGTCGAGGAGAGATCCT
NONE
OsAffx.16524.1.S1_at--1031--8453Chr09:3115662..3115681 (20 bp)
TGGCCATTGTCGAGGAGAGATCCTC
NONE
OsAffx.16524.1.S1_at--1106--4437Chr08:24226293..24226313 (21 bp)
GCCATTGTCGAGGAGAGATCCTCTC
NONE
Target Sequence 
CTCTCGGATCCAACTACGTCGTGGGGAGGGCCAGCGGCGGCGGCGGGCTGGCGCGGCGGAGGTTATGGCCGCCTGCAAAA
ATATGTTTTGGCCATTGTCGAGGAGAGATCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis