Browse Element(s) Details


OsAffx.22629.1.S1_at

Description gb:NM_185249.1
DB_XREF= gi:34897583
GEN=OJ1723_B06.17
TID=OsAffx.22629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) retroelement-like protein (OJ1723_B06.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2248011/11hypothetical protein
LOC_Os11g321902/11hypothetical protein
LOC_Os01g320302/11retrotransposon protein, putative, unclassified
LOC_Os08g192802/11hypothetical protein
LOC_Os04g207402/11hypothetical protein
LOC_Os05g208801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g189301/11hypothetical protein
LOC_Os01g290001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g201501/11hypothetical protein
LOC_Os09g074301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g193501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g200501/11retrotransposon protein, putative, unclassified
LOC_Os02g238241/11hypothetical protein
LOC_Os08g266601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22440OsAffx.22633.1.S1_at11/117+12615046..12616740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22440Os.10779.1.S1_at1/117+12615046..12616740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22450OsAffx.24947.2.S1_x_at2/117+12620951..12621528hypothetical protein
LOC_Os07g22450OsAffx.24947.2.S1_at1/117+12620951..12621528hypothetical protein
LOC_Os07g22460OsAffx.22631.1.S1_at11/117+12627098..12627685hypothetical protein
LOC_Os07g22470OsAffx.21042.1.S1_at11/117+12630712..12632412hypothetical protein
LOC_Os07g22480OsAffx.22629.1.S1_at11/117+12639753..12644850hypothetical protein
LOC_Os07g22480OsAffx.30013.5.S1_x_at1/117+12639753..12644850hypothetical protein
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22629.1.S1_at--526--4271Chr07:12644352..12644376 (25 bp)
CCTCCCACCGAGTGTTATGTGGGCA
LOC_Os07g22480
OsAffx.22629.1.S1_at--919--3351Chr07:12644357..12644381 (25 bp)
CACCGAGTGTTATGTGGGCACCCTG
LOC_Os07g22480
OsAffx.22629.1.S1_at--980--2931Chr07:12644388..12644412 (25 bp)
AAGGCAGTGGATGAGGTGCTCACAA
LOC_Os07g22480
OsAffx.22629.1.S1_at--70--8571Chr07:12644395..12644537 (25 bp)
TGGATGAGGTGCTCACAAAGAAGGA
LOC_Os07g22480
OsAffx.22629.1.S1_at--696--8431Chr07:12644617..12644641 (25 bp)
GGCCAATTCCAAGAAAATGAGGTGA
LOC_Os07g22480
OsAffx.22629.1.S1_at--343--6152Chr09:3714225..3714245 (21 bp)
GAGGTGAAATCACCGGAGCCCTCGA
LOC_Os09g07430
OsAffx.22629.1.S1_at--9--395Chr07:12644643..12644667 (25 bp)
ATCACCGGAGCCCTCGATCCATAAG
LOC_Os07g22480
OsAffx.22629.1.S1_at--957--6355Chr08:12008548..12008571 (24 bp)
GATCCATAAGCTCGCTGCGCAAGTG
LOC_Os08g20050
OsAffx.22629.1.S1_at--51--379Chr08:16073183..16073203 (21 bp)
ATAATTTCGATACCCTTAGTCATGG
LOC_Os08g26660
OsAffx.22629.1.S1_at--242--10612Chr07:12644764..12644788 (25 bp)
TTCGATACCCTTAGTCATGGTTTGT
LOC_Os07g22480
OsAffx.22629.1.S1_at--109--3094Chr07:12644796..12644820 (25 bp)
AATCAAGCGTGCATTCATAGATATG
LOC_Os07g22480
Target Sequence 
CCTCCCACCGAGTGTTATGTGGGCACCCTGTTCACCAAGGCAGTGGATGAGGTGCTCACAAAGAAGGAGGGGGCAGCGGA
ATCCCGTAGCCATCCACCTATGAAGGTGAAGCGTCACTTGACGCCCCCTCCAATTGTGAGGGCTCCCGGCCAATTCCAAG
AAAATGAGGTGAAATCACCGGAGCCCTCGATCCATAAGCTCGCTGCGCAAGTGAAGAAACTCCGCAAGGAGAACATAGAG
CTTAGGGATCGCAACGCGGAGCTAGGGGTAGAGCTTGCTGAAATTAGGAATAATTTCGATACCCTTAGTCATGGTTTGTG
CGCTAAAATCAAGCGTGCATTCATAGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis