Browse Element(s) Details


OsAffx.22631.1.S1_at

Description tigr:9635.m02121
TID=OsAffx.22631.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2246011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22420OsAffx.8243.1.S1_at1/117+12596180..12602468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22420OsAffx.1646.1.S1_x_at1/117+12596180..12602468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22420OsAffx.22722.1.S1_x_at1/117+12596180..12602468retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22430OsAffx.5954.4.S1_x_at5/117+12605062..12611889retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22430OsAffx.5954.5.S1_x_at2/117+12605062..12611889retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22430OsAffx.5954.2.S1_at1/117+12605062..12611889retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22440OsAffx.22633.1.S1_at11/117+12615046..12616740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22440Os.10779.1.S1_at1/117+12615046..12616740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22450OsAffx.24947.2.S1_x_at2/117+12620951..12621528hypothetical protein
LOC_Os07g22450OsAffx.24947.2.S1_at1/117+12620951..12621528hypothetical protein
LOC_Os07g22460OsAffx.22631.1.S1_at11/117+12627098..12627685hypothetical protein
LOC_Os07g22470OsAffx.21042.1.S1_at11/117+12630712..12632412hypothetical protein
LOC_Os07g22480OsAffx.22629.1.S1_at11/117+12639753..12644850hypothetical protein
LOC_Os07g22480OsAffx.30013.5.S1_x_at1/117+12639753..12644850hypothetical protein
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22631.1.S1_at--762--4331Chr07:12627195..12627219 (25 bp)
CCATGGTGGATGGTGCAACTTCAAC
LOC_Os07g22460
OsAffx.22631.1.S1_at--408--2051Chr07:12627212..12627236 (25 bp)
ACTTCAACTGGCTTGCATGTCATCA
LOC_Os07g22460
OsAffx.22631.1.S1_at--815--191Chr07:12627257..12627281 (25 bp)
ATTTCGATGTGGTACACGCGTTCCC
LOC_Os07g22460
OsAffx.22631.1.S1_at--272--6711Chr07:12627276..12627300 (25 bp)
GTTCCCGTGTGTCCTGTGAGCTTTG
LOC_Os07g22460
OsAffx.22631.1.S1_at--397--5691Chr07:12627320..12627344 (25 bp)
GACTTCATCGAACAGCTGAGGGCTC
LOC_Os07g22460
OsAffx.22631.1.S1_at--955--10231Chr07:12627461..12627485 (25 bp)
TTTGGCTGGGTTTACGACATAAGTT
LOC_Os07g22460
OsAffx.22631.1.S1_at--566--7971Chr07:12627492..12627516 (25 bp)
GGATGTCACGAGCTCGTATTCACGT
LOC_Os07g22460
OsAffx.22631.1.S1_at--524--5891Chr07:12627501..12627525 (25 bp)
GAGCTCGTATTCACGTTCACGGCCT
LOC_Os07g22460
OsAffx.22631.1.S1_at--351--8711Chr07:12627541..12627565 (25 bp)
TGTCCTGGCGACATCCAGCAGAACG
LOC_Os07g22460
OsAffx.22631.1.S1_at--815--6091Chr07:12627587..12627611 (25 bp)
GAGTCTTCAAGGCTCGAATGGCTGC
LOC_Os07g22460
OsAffx.22631.1.S1_at--188--2971Chr07:12627603..12627627 (25 bp)
AATGGCTGCCACTCTGCCAGAGGTG
LOC_Os07g22460
Target Sequence 
CCATGGTGGATGGTGCAACTTCAACTGGCTTGCATGTCATCACAAACATCGAAAACAGAGCTATTTCGATGTGGTACACG
CGTTCCCGTGTGTCCTGTGAGCTTTGGTTCGTCGGAGTGGCCGGGGACTTCATCGAACAGCTGAGGGCTCCCACCGGCGG
CAGGGAAGACGGCGGCATTTCGGGCGGATGGAGGCAGTCTTTGATGGGCGAAGTGAGGGTGGTGAAGGAGGAGAGTGGTG
AATCTTGTGGGCAAGGTCTTGGGCGCTTTGGCTGGGTTTACGACATAAGTTGGATGGGGATGTCACGAGCTCGTATTCAC
GTTCACGGCCTCACTGCACAGCGCCCTGTCCTGGCGACATCCAGCAGAACGGATGGGACAACACGGATGGGGGAGTCTTC
AAGGCTCGAATGGCTGCCACTCTGCCAGAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis