Browse Element(s) Details


OsAffx.24947.2.S1_at

Description tigr:9629.m04872
TID=OsAffx.24947.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NAC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5036011/11NAC domain containing protein, expressed
LOC_Os07g224501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed
LOC_Os01g50380OsAffx.21483.1.S1_at4/111+29251268..29251702hypothetical protein
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24947.2.S1_at--272--8912Chr01:29242063..29242087 (25 bp)
TGAGCACGGTGCAGTTGTAAACAAG
LOC_Os01g50360
OsAffx.24947.2.S1_at--869--7771Chr01:29242070..29242094 (25 bp)
GGTGCAGTTGTAAACAAGGGCTCCA
LOC_Os01g50360
OsAffx.24947.2.S1_at--582--3431Chr01:29242074..29242098 (25 bp)
CAGTTGTAAACAAGGGCTCCAAGCA
LOC_Os01g50360
OsAffx.24947.2.S1_at--1081--10591Chr01:29242288..29242312 (25 bp)
TTCGTGGTGTCCAAACCTCATGACG
LOC_Os01g50360
OsAffx.24947.2.S1_at--777--8611Chr01:29242292..29242316 (25 bp)
TGGTGTCCAAACCTCATGACGTCTT
LOC_Os01g50360
OsAffx.24947.2.S1_at--786--9211Chr01:29242297..29242321 (25 bp)
TCCAAACCTCATGACGTCTTCAAGA
LOC_Os01g50360
OsAffx.24947.2.S1_at--162--7132Chr01:29242525..29242549 (25 bp)
GTCATGACGCAGGCCTCGTCGTCGT
LOC_Os01g50360
OsAffx.24947.2.S1_at--506--7091Chr01:29242577..29242601 (25 bp)
GTCACCGTGTCATCCGCCGTCGTGT
LOC_Os01g50360
OsAffx.24947.2.S1_at--99--7451Chr01:29242583..29242607 (25 bp)
GTGTCATCCGCCGTCGTGTCGTTGT
LOC_Os01g50360
OsAffx.24947.2.S1_at--1040--7191Chr01:29242595..29242619 (25 bp)
GTCGTGTCGTTGTCGCGTGTCCTTC
LOC_Os01g50360
OsAffx.24947.2.S1_at--437--6631Chr01:29242603..29242627 (25 bp)
GTTGTCGCGTGTCCTTCCGTGTCGT
LOC_Os01g50360
Target Sequence 
TGAGCACGGTGCAGTTGTAAACAAGGGCTCCAAGCAGAGCAGGAGCGAGAAGAAGAGCCGCAAGGCCATGATGAAGCTCG
GAATGAAACCCGTCACGGGAGTCAGCAGGATTACCATCGAGAGAGCCAAGAATATACTGTTCGTGGTGTCCAAACCTCAT
GACGTCTTCAAGAGCCCGACGTCGGAGTCGTACGTCATATTCGGGGAGGCCAAGATCGAGGACCTGAGCTCCCAGCTGCA
GGCGCAGGCAGCGCAGCAGTTCAGGATGCAAGATCTGAGCAAGGTGATGTCCAAGCCGGACGCGGCGGCAGCAGCGCCGG
CCGACGAGGAGCAAGAGGTGGACGAGACAGGGATAGAGCCCCGCGACATCGACGTCGTCATGACGCAGGCCTCGTCGTCG
TCGCCGCCGCCGTATCGTCGCCATCGCCGTCACCGTGTCATCCGCCGTCGTGTCGTTGTCGCGTGTCCTTCCGTGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24947.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis