Browse Element(s) Details


OsAffx.11544.1.S1_at

Description tigr:9629.m04868
TID=OsAffx.11544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5033011/11Strictosidine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein
LOC_Os01g50290OsAffx.11542.1.S1_at11/111+29203238..29203955hypothetical protein
LOC_Os01g50300OsAffx.11543.1.S1_at11/111+29204996..29205514hypothetical protein
LOC_Os01g50310Os.37916.1.S1_at11/111+29208316..29209801expressed protein
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11544.1.S1_at--483--8351Chr01:29218804..29218828 (25 bp)
GGCTGGACCACGTTCGCGTACAATG
LOC_Os01g50330
OsAffx.11544.1.S1_at--228--4151Chr01:29218790..29218814 (25 bp)
CGCGTACAATGCGAACTACCGGAAA
LOC_Os01g50330
OsAffx.11544.1.S1_at--50--5471Chr01:29218778..29218802 (25 bp)
GAACTACCGGAAAATCCCTCTCTGC
LOC_Os01g50330
OsAffx.11544.1.S1_at--942--10791Chr01:29218690..29218714 (25 bp)
TTGTTCAGGAAGACCGGCGAGCTCT
LOC_Os01g50330
OsAffx.11544.1.S1_at--806--2951Chr01:29218564..29218588 (25 bp)
AATGGCCTTGACGTCGACCAAGCTA
LOC_Os01g50330
OsAffx.11544.1.S1_at--1001--3231Chr01:29218546..29218570 (25 bp)
CAAGCTACGGGTGATGCCTACTTCA
LOC_Os01g50330
OsAffx.11544.1.S1_at--811--5051Chr01:29218512..29218536 (25 bp)
GCAGCACGTACACCCGCAGGTTCAA
LOC_Os01g50330
OsAffx.11544.1.S1_at--1122--8031Chr01:29218484..29218508 (25 bp)
GGAGATCACGATGAACGCCGACGCG
LOC_Os01g50330
OsAffx.11544.1.S1_at--274--4091Chr01:29218461..29218485 (25 bp)
CGACAGGGCGGCTGCTCAAGTACGA
LOC_Os01g50330
OsAffx.11544.1.S1_at--1090--9071Chr01:29218449..29218473 (25 bp)
TGCTCAAGTACGACGCGCGGACGCG
LOC_Os01g50330
OsAffx.11544.1.S1_at--517--7691Chr01:29218422..29218446 (25 bp)
GGGTCACCGTGCTGAAGACCGACCT
LOC_Os01g50330
Target Sequence 
GGCTGGACCACGTTCGCGTACAATGCGAACTACCGGAAAATCCCTCTCTGCTCGTCGTCCGAGGTGCCACCGGAGGAGAG
GGAGAGCATCTGCGGGCGCCCGCTGGGGATCCGGTTGTTCAGGAAGACCGGCGAGCTCTACATCGCCGACGCGTACAAGG
GGCTGATGAAGGTCGGGCCCGACGGCGGCGAGGCCCAGGTGGTCGCGACCGAGGCGGACGGCGTCCCCTTCCACTTCCTC
AATGGCCTTGACGTCGACCAAGCTACGGGTGATGCCTACTTCACCGACAGCAGCAGCACGTACACCCGCAGGTTCAACGG
GGAGATCACGATGAACGCCGACGCGACAGGGCGGCTGCTCAAGTACGACGCGCGGACGCGGCGGGTCACCGTGCTGAAGA
CCGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis