Browse Element(s) Details


OsAffx.11542.1.S1_at

Description tigr:9629.m04863
TID=OsAffx.11542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein
LOC_Os01g50290OsAffx.11542.1.S1_at11/111+29203238..29203955hypothetical protein
LOC_Os01g50300OsAffx.11543.1.S1_at11/111+29204996..29205514hypothetical protein
LOC_Os01g50310Os.37916.1.S1_at11/111+29208316..29209801expressed protein
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11542.1.S1_at--179--6151Chr01:29203901..29203925 (25 bp)
GAGGTGGCCGCCATTTGCGAACAAC
LOC_Os01g50290
OsAffx.11542.1.S1_at--277--5491Chr01:29203883..29203907 (25 bp)
GAACAACTCGTAGACGATCCCGACG
LOC_Os01g50290
OsAffx.11542.1.S1_at--107--2811Chr01:29203853..29203877 (25 bp)
AAGATCATGCTGGACTCCGTGCTCT
LOC_Os01g50290
OsAffx.11542.1.S1_at--846--8431Chr01:29203808..29203832 (25 bp)
GGCCACATCACCACGTTGGAGAATC
LOC_Os01g50290
OsAffx.11542.1.S1_at--891--9371Chr01:29203780..29203804 (25 bp)
TCGATTTTTACCTGCGTGCGGCGGA
LOC_Os01g50290
OsAffx.11542.1.S1_at--508--1871Chr01:29203756..29203780 (25 bp)
ACGAGCCGATCATGGACTGGCCCAT
LOC_Os01g50290
OsAffx.11542.1.S1_at--636--5471Chr01:29203694..29203718 (25 bp)
GAACTCTACCAGGATCTCAGGGCGG
LOC_Os01g50290
OsAffx.11542.1.S1_at--551--6271Chr01:29203664..29203688 (25 bp)
GATGTCCTCATGGAGCACCGCAGGC
LOC_Os01g50290
OsAffx.11542.1.S1_at--776--9031Chr01:29203636..29203660 (25 bp)
TGCACCGAATCGTCAAGCTGCTCGT
LOC_Os01g50290
OsAffx.11542.1.S1_at--919--7131Chr01:29203613..29203637 (25 bp)
GTCTTCATCCGGACTTACGGCATCA
LOC_Os01g50290
OsAffx.11542.1.S1_at--228--5071Chr01:29203495..29203519 (25 bp)
GCACGGTGCCCGAGTTCGAGAACCT
LOC_Os01g50290
Target Sequence 
GAGGTGGCCGCCATTTGCGAACAACTCGTAGACGATCCCGACGCCGCCAAGATCATGCTGGACTCCGTGCTCTCCGGCTT
CGCGGCCCTCGACGGCCACATCACCACGTTGGAGAATCTGCTCGATTTTTACCTGCGTGCGGCGGACGAGCCGATCATGG
ACTGGCCCATGGCCGAGGTGGAGCGGGAGGAGCAGCGCGCCCTCGAGGAACTCTACCAGGATCTCAGGGCGGACGCCGAT
GTCCTCATGGAGCACCGCAGGCGGCTGCACCGAATCGTCAAGCTGCTCGTCTTCATCCGGACTTACGGCATCATCAAGCG
CGCCTTGCGGCGCTTCCTCCCCGCCGCGGCCCTCAAGTTCGTGGCCGGAGCCGCCGCCGTGGTCGTGTACGTCGAGTGGA
GGCGGGGCACGGTGCCCGAGTTCGAGAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis